Gene Information

Name : fliP (Ddes_0377)
Accession : YP_002478968.1
Strain : Desulfovibrio desulfuricans ATCC 27774
Genome accession: NC_011883
Putative virulence/resistance : Virulence
Product : flagellar biosynthesis protein FliP
Function : -
COG functional category : N : Cell motility
COG ID : COG1338
EC number : 3.1.1.3
Position : 454517 - 455194 bp
Length : 678 bp
Strand : +
Note : FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus

DNA sequence : 
ATGCCCACCTTGCAGCTTACCTTGGCGGGCGGCGCCAAATCGCCTGAAAAAGTCTCCATACTGCTGGAAATTCTCTTTCT
GCTGACCATTCTTTCCGTGGCCCCGGCCATCATGCTTACGGTCACCAGCTTTACCCGTATCATCATTGTTTTCAGTTTCT
TGCGTCAGGCAATGGGCGTGCAGCAACTGCCGCCCACGCAGATTCTGGCAAGTCTTGCCATTTTTATGACGGTCGTCATC
ATGTTTCCCGTGGGCAGGCAGATCAATGACGACGCCCTTCAGCCCTACCTCAATGAGCGCATCGACTACAGGGAAGCCCT
GGACAAGGCCCAGGCTCCGCTGCGTTCCTTCATGTTCAAGCACACGCGCGAAAAAGACCTTTCCATCTTCTATTCCATCA
GCAATATGGAAGCCCCGAAGAACAAGGAAGAGGTTCCTACTATGCTTCTGGCGGCGGCCTACGTTATCAGTGAGCTGAAA
ACGGCCTTCACCATCGGCTTTCTCATCTACATTCCTTTTCTTGTGCTGGACATGGTGATTTCCAGTGTCCTGCTTGCCAT
GGGCATGATGATGCTGCCGCCCATGATGGTCTCCATGCCGTTCAAGCTGCTGCTTTTTGTGATGGTGGACGGCTGGAACC
TGCTGGTGGGGTCGCTGGTCAACAGCTTTCTGCTGTGA

Protein sequence : 
MPTLQLTLAGGAKSPEKVSILLEILFLLTILSVAPAIMLTVTSFTRIIIVFSFLRQAMGVQQLPPTQILASLAIFMTVVI
MFPVGRQINDDALQPYLNERIDYREALDKAQAPLRSFMFKHTREKDLSIFYSISNMEAPKNKEEVPTMLLAAAYVISELK
TAFTIGFLIYIPFLVLDMVISSVLLAMGMMMLPPMMVSMPFKLLLFVMVDGWNLLVGSLVNSFLL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 2e-27 41
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 1e-27 41
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 1e-27 41
hrcR AAD21321.1 HrcR Virulence Hrp PAI Protein 1e-27 41
hrcR NP_640757.1 type III secretion system protein Virulence Hrp PAI Protein 2e-27 41
hrcR YP_362153.1 type III secretion system protein Virulence Hrp PAI Protein 2e-27 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
fliP YP_002478968.1 flagellar biosynthesis protein FliP VFG1259 Protein 1e-42 56
fliP YP_002478968.1 flagellar biosynthesis protein FliP VFG2016 Protein 5e-43 53
fliP YP_002478968.1 flagellar biosynthesis protein FliP VFG2494 Protein 1e-40 53
fliP YP_002478968.1 flagellar biosynthesis protein FliP VFG2338 Protein 8e-38 52
fliP YP_002478968.1 flagellar biosynthesis protein FliP VFG0394 Protein 2e-21 44
fliP YP_002478968.1 flagellar biosynthesis protein FliP VFG0188 Protein 2e-22 41