Gene Information

Name : Ddes_1569 (Ddes_1569)
Accession : YP_002480148.1
Strain : Desulfovibrio desulfuricans ATCC 27774
Genome accession: NC_011883
Putative virulence/resistance : Virulence
Product : ATPase FliI/YscN
Function : -
COG functional category : N : Cell motility
COG ID : COG1157
EC number : -
Position : 1888702 - 1890216 bp
Length : 1515 bp
Strand : -
Note : KEGG: dvl:Dvul_2671 flagellar protein export ATPase FliI; TIGRFAM: ATPase, FliI/YscN family; ATPase FliI/YscN; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; H+transporting two-sector ATPase alpha/beta subunit domain protein; SM

DNA sequence :
ATGAAGCTGGACCCGCAAGCCTGCATCAAATTACTGCAAACAAGCAATCCCGTGCGTCTGTACGGCAAGGTCAACAAGGT
CGTGGGCCTTGTGGCAGAAGGCAGCGGTCTGCGCGCTCCTTTGGGGGCCGTGTGCCACATGCTGCCCGATGGCGGCGATG
AAGGCATCGCCGCCGAGGTGGTAGGTTTTCGTGACGGCAATCTGTTGTTCATGCCTTACGGCGATATGCGCGGCATCCGC
CCGGGCAGCCGCATCCGCAACACCAGCCTGCCGCCGGTTTTTCCGGCCGGGCCGGGATTGCTTGGGCGGGCCTTTGACGC
TTTCGGCACGCCGCTGGACGCAGGCCCACCGATCAGCGCTGAACTGTATTCTTCGCCGTTGCCTATGGATGATAATGCCA
AGGCCGACTTTGCCCGTCAGGTGCAGGAACAGGAGCCGTATGTGCCGGAATGGGCCGCCGTGGCCCGCCAGCAGTGGCAT
CCCGAGCTTGTTCCCATCTACGCCGACCCGCCAAGCCCGTTACAGCGCCCGCGCATTACGGATATTCTTGATGTGGGCGT
CCGCTCGGTCAACAGTCTGCTCACACTCGGCAAGGGGCAGCGTGTGGGCATTATGGCCGGTTCCGGCGTGGGCAAATCTA
CGCTTATGGGCATGATGGCCCGCTATACCCGCGCTGATGTCAACGTTATCGCCCTCATTGGCGAACGTGGCCGTGAAGTG
GTGGAATTTATGGAACGGGACCTCGGGCCGGAGGGCATGGCGCGTTCTGTTCTGGTCATCGCCACATCCGACCAGTCCCC
TCTGGTACGTATGCGCGCGGCCTATGCAGCTACGGGAGTTGCCGAATATTTCCGCGACAAGGGCATGGACGTACTGCTCA
TGATGGACTCTGTAACCCGCTTTGCCATGGCCGCGCGCGAAGTAGGGCTGGCTGTGGGCGAGCCACCGACCACCAAGGGC
TATACCCCCACGGTTTTCGCTCAGCTGCCCAAGCTGCTGGAACGGGCCGGGCGGTCCGCCAGGGGAACCATTACGGGTAT
TTATACAGTGCTGGTGGACGGCGATGACTTTAACGAACCCATTGCCGACGCCGTGCGGTCCATTCTGGACGGTCACATTG
TGCTCACCCGCGATCTGGCGGACCAGGGGCATTTTCCTGCCATTGACGTGCTGCGCTCCATCAGCCGTTTGCGGTCGGAT
ATCTGCGATCGGCAGGATGTTCTGTCTGGGCGGGTGGTTACGCGTAATATGAGCACCTTTCGTAAAGTGGAGGATATGGT
CAACATCGGGGCCTACGCCAAGGGAACCAATGCCGAGATTGACGCCGCCATTGAAAGCATGCCCGCCATCAATTCTTTCT
TGCGACAGGACGTGGGCGACCCGCAGTTTCTGGAACCAAGCATGCAGCAACTGCGTACGCTTGCCCAACTGGCCGAAGCC
GCAGCATCCCCTATGGCGCAGGCTGCTCCCGGCATGCCGCAAGGGCAGGGCGGAGTGGCTCCGTTGCGCAGCTAG

Protein sequence :
MKLDPQACIKLLQTSNPVRLYGKVNKVVGLVAEGSGLRAPLGAVCHMLPDGGDEGIAAEVVGFRDGNLLFMPYGDMRGIR
PGSRIRNTSLPPVFPAGPGLLGRAFDAFGTPLDAGPPISAELYSSPLPMDDNAKADFARQVQEQEPYVPEWAAVARQQWH
PELVPIYADPPSPLQRPRITDILDVGVRSVNSLLTLGKGQRVGIMAGSGVGKSTLMGMMARYTRADVNVIALIGERGREV
VEFMERDLGPEGMARSVLVIATSDQSPLVRMRAAYAATGVAEYFRDKGMDVLLMMDSVTRFAMAAREVGLAVGEPPTTKG
YTPTVFAQLPKLLERAGRSARGTITGIYTVLVDGDDFNEPIADAVRSILDGHIVLTRDLADQGHFPAIDVLRSISRLRSD
ICDRQDVLSGRVVTRNMSTFRKVEDMVNIGAYAKGTNAEIDAAIESMPAINSFLRQDVGDPQFLEPSMQQLRTLAQLAEA
AASPMAQAAPGMPQGQGGVAPLRS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrcN NP_640767.1 type III secretion system ATPase Virulence Hrp PAI Protein 4e-85 45
hrpB6 BAB07852.1 HrpB6 Virulence Hrp PAI Protein 4e-85 45
hrcN YP_198730.1 type III secretion system ATPase Virulence Hrp PAI Protein 5e-85 45
hrpB6 AAF61281.1 HrpB6 Virulence Hrp PAI Protein 4e-85 45
hrcN AAP34339.1 HrcN Virulence Hrp PAI Protein 9e-86 45
lscN AAO18044.1 LscN Virulence TTSS locus Protein 3e-83 44
hrpB6 AAB08461.1 HrpB6 Virulence Hrp PAI Protein 1e-84 44
hrcN YP_362163.1 type III secretion system ATPase Virulence Hrp PAI Protein 2e-84 44
XC_3006 YP_244074.1 type III secretion system ATPase Virulence Hrp PAI Protein 2e-83 44
hrcN NP_636610.1 type III secretion system ATPase Virulence Hrp PAI Protein 2e-83 44
hrcN AAG33879.1 HrcN Virulence Hrp PAI Protein 8e-66 42
YPO0267 YP_002345348.1 type III secretion system ATPase Virulence Not named Protein 7e-78 42
hrcN AAR25633.1 type III secretion cytoplasmic ATPase HrcN Not tested Not named Protein 2e-66 41
hrcN NP_791227.1 type III secretion cytoplasmic ATPase HrcN Virulence Hrp PAI Protein 2e-67 41
hrcN AAT96141.1 HrcN Virulence T-PAI Protein 3e-68 41
hrcN AAT96195.1 HrcN Virulence T-PAI Protein 1e-68 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Ddes_1569 YP_002480148.1 ATPase FliI/YscN VFG0048 Protein 2e-87 47
Ddes_1569 YP_002480148.1 ATPase FliI/YscN VFG2144 Protein 9e-92 47
Ddes_1569 YP_002480148.1 ATPase FliI/YscN VFG2499 Protein 2e-83 46
Ddes_1569 YP_002480148.1 ATPase FliI/YscN VFG2331 Protein 1e-84 45
Ddes_1569 YP_002480148.1 ATPase FliI/YscN VFG0390 Protein 1e-82 44
Ddes_1569 YP_002480148.1 ATPase FliI/YscN VFG1254 Protein 3e-86 44
Ddes_1569 YP_002480148.1 ATPase FliI/YscN VFG0192 Protein 6e-84 43