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Name : topB (HAPS_0428) Accession : YP_002475047.1 Strain : Haemophilus parasuis SH0165 Genome accession: NC_011852 Putative virulence/resistance : Unknown Product : DNA topoisomerase III Function : - COG functional category : L : Replication, recombination and repair COG ID : COG0550 EC number : - Position : 461455 - 463377 bp Length : 1923 bp Strand : - Note : decatenates replicating daughter chromosomes DNA sequence : ATGCGTTTATTCATTGCAGAAAAGCCAAGTTTAGGGCGTGCGATTGCTGATGTATTGCCGAAACCCCATACCCGTGGGGA CGGCTTTATTCAGTGTGGCGAAGACAATGTGGTCACTTGGTGTATCGGTCACTTGTTAGAACAAGCTGAACCTGATGCTT ATGATGAACGTTTCAAAATGTGGCGAATGGAACATTTGCCGATTATCCCTGAACAGTGGAAGCTGATCCCCAAAAAAGAG ACACTCAAGCAGTTTAAGGTGGTAGAGCGTTTAATTAAACAAGCGGATATTTTAGTCAATGCAGGCGACCCAGATCGTGA AGGACAACTGTTGGTGGACGAAGTTTTTGGCTACTTAAATTTATCCCCTGAGCGGAAATCCCAAATTCAGCGGTGTTTGA TTAGCGATCTCAACCCTAATGCTGTCAAAAAAGCGATTGAAAAATTGCAATTTAATCGAGATTTCGTACCGCTTGCTACA TCGGCTTTAGCTCGTGCAAGGGCAGACTGGCTATATGGGATCAATATGACCAGAGCCTATACCCTACAAGGGCGTTGGGC AGGTTATAAAGGCGTGCTTTCCGTTGGGCGTGTACAAACGCCAGTGTTGGGCTTGATTGTCCGACGTGATCTTGAGATCG AAAATTTTATCCCAAAAGATTATTTTGAAGTGTTGGCAAATGTGGTTGTTCCTGAAACCCAAGAACGTTTTCAAGCACAA TGGCAACCCAGTAAAGCCTGCGAAGATTATCAAGATGAAGATGGACGAGTGCTTTCTCGCCCACTTGCTGAGAATGTAGT AAAACGTATCACGGATCAAGCCGCTTGCGTTACCGAATATCAAGATAAAATGGAAAGTGAAGCAGCACCACTCCCTTATT CACTCTCAGCCTTGCAAATTGATGCGGCTCGCCGTTTTGGCTTATCTGCACAAGATGTGCTTGATGTTTGCCAACGGCTG TATGAAACCCATAAATTGATTACTTATCCCCGTTCCGATAACCGTTATTTGCCGAATGAACATTTTGCCGATCGCCTAAA AGTGATGGCGGCAATTGCGCATCATCTGCCTGAGTATGCTCAAAAGCCTGATGCAGTTGATCCGAATAAGAAAAACCGTT GTTGGAATGACAGTAAGGTAGAAGCTCACCACGCCATTATCCCGACGGCACGTCAAGGGCGGCAAGTTCACTTAACTCAG AATGAACAGTGGATTTATCAGCTTATTGCTCGACAATATTTAATGCAATTTTGCCCTGATGCAGAATATCGTAAAGGAAA AATTGTGTTAAATATCGCAGGGGGGACTTTTATTGCGCAAGCTAGAAACTTGGTTGTCGCAGGTTGGAAGTCTTTGTTAG GCAAAGAAGATAATGATGAAATCGTTGAACCTTTGCTACCTGTGGTTAAAAAAGATCAGCAGTTATGGTGTGAAAGCGGT GAGATCATCAGTAAAAAAACACAGCCTCCACGCCATTTTACTGATGCGACCTTGTTGTCAGCAATGACGGGTATTGCTCG CTTTGTACAAGATAAACAGCTCAAAAAAGTGTTGAGAGAAACCGATGGCTTGGGTACAGAAGCCACCCGAGCTGGCATTA TTGAATTATTATTCAAACGTGGTTTTTTAATCAAAAAAGGCAGAAATATTCATAGTACAGAAGCAGGGCGAACCTTAATT AGTGCCTTGCCAGATGTTGCAACACAGCCTGATATGACAGCTCACTGGGAAATGCAACTAACAGACATCAGCAAAAAACA AGCCAGTTATCAACAATTTATGGCAGATTTAAACCAGCGTTTGCCAAGTTTATTAAGCTCTCCAAACAAGCAGATTTTGC AAAGTTTGGCGAAAATAACACCGCTTACAACAAGTTCTAAATCACGTTATACCCGTAAATCTACGCAAAATGTTGAAAAA TAA Protein sequence : MRLFIAEKPSLGRAIADVLPKPHTRGDGFIQCGEDNVVTWCIGHLLEQAEPDAYDERFKMWRMEHLPIIPEQWKLIPKKE TLKQFKVVERLIKQADILVNAGDPDREGQLLVDEVFGYLNLSPERKSQIQRCLISDLNPNAVKKAIEKLQFNRDFVPLAT SALARARADWLYGINMTRAYTLQGRWAGYKGVLSVGRVQTPVLGLIVRRDLEIENFIPKDYFEVLANVVVPETQERFQAQ WQPSKACEDYQDEDGRVLSRPLAENVVKRITDQAACVTEYQDKMESEAAPLPYSLSALQIDAARRFGLSAQDVLDVCQRL YETHKLITYPRSDNRYLPNEHFADRLKVMAAIAHHLPEYAQKPDAVDPNKKNRCWNDSKVEAHHAIIPTARQGRQVHLTQ NEQWIYQLIARQYLMQFCPDAEYRKGKIVLNIAGGTFIAQARNLVVAGWKSLLGKEDNDEIVEPLLPVVKKDQQLWCESG EIISKKTQPPRHFTDATLLSAMTGIARFVQDKQLKKVLRETDGLGTEATRAGIIELLFKRGFLIKKGRNIHSTEAGRTLI SALPDVATQPDMTAHWEMQLTDISKKQASYQQFMADLNQRLPSLLSSPNKQILQSLAKITPLTTSSKSRYTRKSTQNVEK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| topB | AAF14809.1 | topoisomerase B | Not tested | SPI-7 | Protein | 2e-108 | 42 |
| topB | NP_458624.1 | topoisomerase B | Not tested | SPI-7 | Protein | 2e-108 | 42 |
| topB | NP_807836.1 | DNA topoisomerase III | Not tested | SPI-7 | Protein | 2e-108 | 42 |
| topB1 | YP_005176228.1 | DNA topoisomerase III | Not tested | ICEPmu1 | Protein | 2e-108 | 41 |
| pph56 | CAI36097.1 | Topoisomerase IA | Not tested | PPHGI-1 | Protein | 5e-105 | 41 |
