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Name : hsdM (HAPS_0348) Accession : YP_002474980.1 Strain : Haemophilus parasuis SH0165 Genome accession: NC_011852 Putative virulence/resistance : Unknown Product : Type I restriction-modification system methyltransferase subunit Function : - COG functional category : V : Defense mechanisms COG ID : COG0286 EC number : - Position : 375987 - 377675 bp Length : 1689 bp Strand : + Note : COG:V;COG0286 DNA sequence : ATGCACAGCACAGCACAGCACAGCACAGCACAGCACAGCACAGCACATCTGGCTGAAAATTTAGCCAATCAACAGGCGTT TCTTAACAAACTCGATGCCGACCTTTGGAAAGCCGCCGATAAACTTCGCCAACAGCTTGACGCTGCCAACTACAAACACA TCGTTCTCGGTTTAATCTTCTTAAAATACGTTTCCGACAGTTTCTCTGCACAACAAGAAATCATCAAACAACGTTACACC GACCCAACTTCCGATTTTTATCTCGATCCGACCGCTTACAGCGAAAGCGAACTTGCCGATATTCTCAATGCCGAATTGGA AGAACGGGACAACTACGCCCAAGACAACGTATTCTGGGTGCCACAACAAGCCCGTTGGGACGAAATCAAAGTCGTGGCTC GAGCTAACATTGGCGACAAAATCTGGGACGAGAAAACCTTTAAAGGCATTGCCAACTTGATTGATGACGCTTTTGATGCT ATCGAACAAGACAACCCTAAACTCAAAAACGTCATTCAACGCATCAGCCCTTATAAAGTTGATGAAAGCATTTTATTAGG CTTAATCGATCTCTTTTCCGACACCAACTTCACCCGTCCAACCCTTGACGGCAAGCCGATTTCCTTGGCGGCAAAAGATA TTCTCGGTCACGTTTATGAGTATTTTCTCGGACAATTCGCCCTTGCGGAAGGTAAAAAGGGCGGTCAATATTTCACGCCA AAATCCATTGTTACCCTGATTATCGAAATGCTCGAACCCTACAAAGGACGCATTTACGACCCAGCAATGGGGTCGGGTGG CTTTTTTGTGCAAACAGAACGTTTTATCCGCGAACATCAAGGCAACGTCAGCGAAGTGAGCATTTTCGGGCAAGAGTTCA ACCCAACCACTTGGAAACTTGCCGCAATGAATATGGCAATTCGTGGCATTGAATTTGACTTCGGCAAAGGCAACGCCGAC ACCTTCAGCAATCCGCAACACCGTGATAAAAAAATGGATTTTGTAATGGCAAACCCACCGTTCAATATGAAAGACTGGTG GAACGAAAGCCTTGCCCAAGACCCACGCTGGCAATACGGCATACCGCCCGAAGGCAACGCCAACTTTGCGTGGCTACAAC ATATGATTTACCACCTTTCGCCAAACGGACGAATGGCGTTGTTGCTTGCCAACGGCTCAATGTCATCGAACACCAACAAC GAAGGCGAAATCCGCAAAAATATTCTCAAAGCCGACCTTGTGGAAGCGATGATCGCCCTGCCAAGCCAACTCTTTACCAA CACCCAAATTCCAGCCTGTATCTGGATTTTGAACAAAAACAAAGCTCGCAAAGGCGAAGTGCTGTTTATTGACGCACGCC AACTTGGCTATATGAAAGACCGTGTCTTACGCGACTTCACTGCAGACGACATAGCCAAAGTCGCGGACACCTACCACAGC TGGCAACAATCCGCCGACTACCAAAATATCCCTGCATTCTGCTACACCGCAAGCCTTGACGAAATCGCCCAAAACGACTT CGTCCTTACCCCAGGGCGTTATGTCGGTGCTGCCGAACAAGAAGATGACGGTGTACCATTTGCAGAAAAAATGCAAGAAC TGACCGCACTTTTACAACAACAATTTCAGCAAAGTGCAGAATTAGAAGCCAAAATTAAAGCGAATTTGGGAGGGTTGGGG TATGAGTAG Protein sequence : MHSTAQHSTAQHSTAHLAENLANQQAFLNKLDADLWKAADKLRQQLDAANYKHIVLGLIFLKYVSDSFSAQQEIIKQRYT DPTSDFYLDPTAYSESELADILNAELEERDNYAQDNVFWVPQQARWDEIKVVARANIGDKIWDEKTFKGIANLIDDAFDA IEQDNPKLKNVIQRISPYKVDESILLGLIDLFSDTNFTRPTLDGKPISLAAKDILGHVYEYFLGQFALAEGKKGGQYFTP KSIVTLIIEMLEPYKGRIYDPAMGSGGFFVQTERFIREHQGNVSEVSIFGQEFNPTTWKLAAMNMAIRGIEFDFGKGNAD TFSNPQHRDKKMDFVMANPPFNMKDWWNESLAQDPRWQYGIPPEGNANFAWLQHMIYHLSPNGRMALLLANGSMSSNTNN EGEIRKNILKADLVEAMIALPSQLFTNTQIPACIWILNKNKARKGEVLFIDARQLGYMKDRVLRDFTADDIAKVADTYHS WQQSADYQNIPAFCYTASLDEIAQNDFVLTPGRYVGAAEQEDDGVPFAEKMQELTALLQQQFQQSAELEAKIKANLGGLG YE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| api49 | CAF28523.1 | putative HsdM-like N-methyl transferase | Not tested | YAPI | Protein | 9e-175 | 62 |
| hsdM | YP_251979.1 | type I restriction-modification system DNA methylase | Not tested | SCCmec | Protein | 3e-123 | 48 |
| hsdM | BAH57701.1 | type I restriction-modification system DNA methylase | Not tested | Type-VII SCCmec | Protein | 4e-123 | 48 |
| hsdM | BAD24842.1 | HsdM protein | Not tested | Type-V SCCmec | Protein | 5e-121 | 47 |
