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Name : clpB (HAPS_0182) Accession : YP_002474826.1 Strain : Haemophilus parasuis SH0165 Genome accession: NC_011852 Putative virulence/resistance : Virulence Product : ATP-dependent Clp protease subunit B Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 196644 - 199217 bp Length : 2574 bp Strand : - Note : COG:O;COG0542 DNA sequence : ATGAATATTGATAAATTTACCAGCAAATTCCAATCTGCAATTGCCGATGCACAATCTTTAGCCGTTGGCAAAGATAATCC TTATATTGAACCAGCACATTTAATGCTTGCGTTGTTAAAGCAAAATGATGGTTCAATCACACCGCTTGTTACCAGTTTAA ATGTGCAACCGAACCGTTTAAGCAGTGAACTTGATGGCATTATCAGCCGCTTGCCGCAGGTGCAAGGGGGCAATACCCAG CCGTCGCAACAACTTTTTCGCTTGTTAAATCAATGCGATAAATTGTCGCAACAGTTTGGTGATAGCTTTATTTCATCAGA GCTATTTGTGCTTGCGGCACTTGAAGATAATGGTGATTTAGGCAAGTTATTGAAAAACTTAGGTTTAACCAAAGAGAAGG TGACAGCCGCCATTCAACAAATTCGTGGAGGGGAGAGCGTGAATAATCAAAATGCAGAAGAAACGAGACAAGCGTTACAA AAATATACCATTGATTTAACTGAACGGGCTAAAGCAGGCAAACTTGATCCTGTGATCGGGCGTGATGAAGAGATCCGCCG TACGGTGCAAGTATTGCAACGCCGTACTAAAAATAACCCAGTGCTTATCGGTGAACCTGGTGTGGGGAAAACGGCGATTG TCGAAGGTTTAGCACAACGTATTGTCAATGGCGAAGTGCCTGAGGGTTTGAAGAACAAACGGGTATTGTCGTTGGATATG GGAGCGTTAATTGCAGGAGCAAAATACCGTGGTGAGTTTGAAGAACGTTTGAAAGCGGTATTAAATGAACTTGCCAAAGA AGAAGGGCAAGTGATCCTGTTTATTGATGAAATTCATACGATGGTTGGGGCAGGTAAAACCGATGGAGCGATGGACGCTG GTAACTTGTTGAAACCGTCCCTTGCCCGTGGTGAGTTGCACTGTGTCGGGGCGACAACCTTAGATGAATATCGTCAGTAT ATTGAAAAAGATGCAGCACTGGAGCGTCGTTTCCAAAAAGTGTTGGTTGATGAGCCGACGGTTGAAGATACCATTGCGAT TTTGCGTGGTTTGAAAGAACGTTACGAAATTCACCATCACGTTCAAATTACCGACCCTGCGATTGTAGCGGCAGCAACTC TTTCGCACCGCTATATTTCAGATCGTCAGCTACCCGATAAAGCGATTGATTTAATTGATGAAGCGGCTTCCAGCTTGCGT ATGGAAATCGACTCTAAACCAGAGCCGTTAGATAAACTTGAACGCCGTATCATTCAGTTGAAATTAGAGCGTCAAGCGTT GCAAAAAGAAGAAGACGAAGCTAGCCGTCAGCGTCTTGCAAAATTAGACGAGGATCTGACCGCTCGTGAACGTGAATATG CGGAGCTGGAAGAAGTATGGAAAGCAGAAAAATCCGCTCTGTTAGGCACGCAACACATTAAAACCGAGTTGGAAAATGCC CGAATTGAAATGGATCAGGCTCGCCGTGAGAATAACTTTGAGAAAATGTCGGAGTTGCAATACGGAAAAATCCCAGCCCT TGAAAAACAGTTACAAGAAGCGGTAAAACGTGAAGAAGAGGGCGGTGAAAATCATCTACTTCGCACCAAAGTGACCGATG AAGAAATTGCCGAAGTGCTTTCTAAAGCCACGGGTATCCCTGTATCCAAAATGATGGAAGGGGAAAAAGAGAAACTATTA CGAATGGAAGAGGTGCTACATAAACGGGTCATCGGTCAAAGTGAAGCCGTTGATGCAGTGGCAAATGCGATCCGTCGTAG TCGTGCAGGCTTGTCTGATCCAAATCGCCCTATCGGTTCATTCCTATTCTTAGGGCCGACAGGCGTAGGGAAAACAGAGC TTTGCAAAACATTAGCCAACTTCCTATTTGACGACCAAGATGCGATGGTGCGGATCGATATGTCCGAATTTATGGAAAAA CACAGCGTATCTCGCTTAGTTGGCGCACCTCCAGGATATGTCGGCTATGAAGAAGGCGGATATTTGACTGAAGCGGTTCG CCGTCGTCCATATTCCGTCGTATTGCTCGATGAAGTGGAAAAAGCTCACCCGGATGTGTTCAACATTTTATTGCAGGTGC TTGATGATGGTCGTTTAACTGACGGACAAGGTCGCACGGTGGATTTTCGCAACACTGTCGTCATTATGACATCAAACTTA GGTTCGCACTTAATTCAAGAGAATGCGGAAAATATGAGTTACGATGAAATGAAAACTATCGTGATGAATGTGGTTGGGCA ACATTTCCGCCCTGAATTTATCAACCGTATTGATGAAACTGTGGTATTCCACCCATTAGATAAAGAAAATATCCGTGCGA TTGCAAGAATACAGCTTGAACGTCTAATTAAACGTATGGCGGAACGTGGCTATGAAGTGACGGTGACCGATGCGGCAGTT GATCATATCGGCGAAGCAGGCTTTGATCCACTCTTTGGAGCAAGACCGCTCAAACGTGCAATTCAGCAAGAGCTTGAAAA CACCTTGGCACAGCAAATTCTCTCTGGCAAATTGTTGCCGAATAGTCCTGTGACAGTGGATTATCAAGAAGGAAGGGTTG TGGCAGTTCAGTAA Protein sequence : MNIDKFTSKFQSAIADAQSLAVGKDNPYIEPAHLMLALLKQNDGSITPLVTSLNVQPNRLSSELDGIISRLPQVQGGNTQ PSQQLFRLLNQCDKLSQQFGDSFISSELFVLAALEDNGDLGKLLKNLGLTKEKVTAAIQQIRGGESVNNQNAEETRQALQ KYTIDLTERAKAGKLDPVIGRDEEIRRTVQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGEVPEGLKNKRVLSLDM GALIAGAKYRGEFEERLKAVLNELAKEEGQVILFIDEIHTMVGAGKTDGAMDAGNLLKPSLARGELHCVGATTLDEYRQY IEKDAALERRFQKVLVDEPTVEDTIAILRGLKERYEIHHHVQITDPAIVAAATLSHRYISDRQLPDKAIDLIDEAASSLR MEIDSKPEPLDKLERRIIQLKLERQALQKEEDEASRQRLAKLDEDLTAREREYAELEEVWKAEKSALLGTQHIKTELENA RIEMDQARRENNFEKMSELQYGKIPALEKQLQEAVKREEEGGENHLLRTKVTDEEIAEVLSKATGIPVSKMMEGEKEKLL RMEEVLHKRVIGQSEAVDAVANAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKTLANFLFDDQDAMVRIDMSEFMEK HSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVVLLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNL GSHLIQENAENMSYDEMKTIVMNVVGQHFRPEFINRIDETVVFHPLDKENIRAIARIQLERLIKRMAERGYEVTVTDAAV DHIGEAGFDPLFGARPLKRAIQQELENTLAQQILSGKLLPNSPVTVDYQEGRVVAVQ |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| STY0294 | NP_454876.1 | ClpB-like protein | Not tested | SPI-6 | Protein | 7e-110 | 43 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| clpB | YP_002474826.1 | ATP-dependent Clp protease subunit B | VFG0079 | Protein | 9e-142 | 42 |
| clpB | YP_002474826.1 | ATP-dependent Clp protease subunit B | VFG2084 | Protein | 2e-112 | 42 |
