Gene Information

Name : CKR_0874 (CKR_0874)
Accession : YP_002471339.1
Strain : Clostridium kluyveri NBRC 12016
Genome accession: NC_011837
Putative virulence/resistance : Virulence
Product : hypothetical protein
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 968530 - 969237 bp
Length : 708 bp
Strand : -
Note : homology (Evalue<1e-4) to COG0745 [TK] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain

DNA sequence : 
ATGAGGTCTACACAAATGAACGTGCCTAGAATATTAATCGTAGAGGACGATGAAGAAATAAATAATTTGATTTATAATAC
TTTAAAAAGAGAAAAATATAATATGATACAAGCTTTCAATGGAGAAGATGCAATAAATAAATATCATAGTGATAATTTTC
AATTAGTTATTCTTGATTTAATGCTTCCATATATAGACGGCATAGAAGTCTTAAGAAAAATACGAGAAAGCAGTACAGTA
CCTATTATAATCCTATCTGCCAAGGACCAAGAAACAGATAGAATTATAGGCCTTGGCATGGGTGCAGATGACTACATTGT
AAAACCTTTTTCCATAAGAGAATTAACCGCAAGAGTTAAATCTCAGCTTAGAAGATATATAAGCTATAATAAAGAGTACT
CTAAAAATCCAATTTTACAATATGCGGATCTTAAATTGAACACTTTAAATTACAAAGTATCTAAAAAAAATAAGGAATTG
AATTTAACACCAAAAGAATTTCAACTTCTAAAACTTTTTCTTGAAAATCCAGACAGGGTATTTACAAAAGCTCAAATATT
TAATAATGTATGGGAAAATAAATATATACATGATGATAATACTGTAATGGTACATATAAAAAGACTGAGAAATAAAATTG
AAGATACTCCAAACAACCCTAAATATATATCAACTGTTTGGGGTATAGGATACAAACTGGGTGAATAA

Protein sequence : 
MRSTQMNVPRILIVEDDEEINNLIYNTLKREKYNMIQAFNGEDAINKYHSDNFQLVILDLMLPYIDGIEVLRKIRESSTV
PIIILSAKDQETDRIIGLGMGADDYIVKPFSIRELTARVKSQLRRYISYNKEYSKNPILQYADLKLNTLNYKVSKKNKEL
NLTPKEFQLLKLFLENPDRVFTKAQIFNNVWENKYIHDDNTVMVHIKRLRNKIEDTPNNPKYISTVWGIGYKLGE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
c3565 NP_755440.1 response regulator Not tested PAI I CFT073 Protein 8e-38 42
unnamed CAD42044.1 hypothetical protein Not tested PAI II 536 Protein 5e-38 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CKR_0874 YP_002471339.1 hypothetical protein AM180355.1.gene1830. Protein 1e-45 46
CKR_0874 YP_002471339.1 hypothetical protein DQ212986.1.gene4.p01 Protein 5e-45 45
CKR_0874 YP_002471339.1 hypothetical protein NC_012469.1.7685629. Protein 3e-44 45
CKR_0874 YP_002471339.1 hypothetical protein AF155139.2.orf0.gene Protein 3e-46 43
CKR_0874 YP_002471339.1 hypothetical protein NC_005054.2598277.p0 Protein 8e-44 43
CKR_0874 YP_002471339.1 hypothetical protein NC_014475.1.orf0.gen Protein 8e-44 43
CKR_0874 YP_002471339.1 hypothetical protein HE999704.1.gene2815. Protein 2e-39 42
CKR_0874 YP_002471339.1 hypothetical protein NC_002952.2859905.p0 Protein 3e-41 42
CKR_0874 YP_002471339.1 hypothetical protein NC_002758.1121668.p0 Protein 2e-41 42
CKR_0874 YP_002471339.1 hypothetical protein NC_009641.5332272.p0 Protein 2e-41 42
CKR_0874 YP_002471339.1 hypothetical protein NC_013450.8614421.p0 Protein 2e-41 42
CKR_0874 YP_002471339.1 hypothetical protein NC_007793.3914279.p0 Protein 2e-41 42
CKR_0874 YP_002471339.1 hypothetical protein NC_003923.1003749.p0 Protein 2e-41 42
CKR_0874 YP_002471339.1 hypothetical protein NC_002745.1124361.p0 Protein 2e-41 42
CKR_0874 YP_002471339.1 hypothetical protein NC_009782.5559369.p0 Protein 2e-41 42
CKR_0874 YP_002471339.1 hypothetical protein NC_002951.3237708.p0 Protein 2e-41 42
CKR_0874 YP_002471339.1 hypothetical protein NC_007622.3794472.p0 Protein 3e-41 42
CKR_0874 YP_002471339.1 hypothetical protein EU250284.1.orf4.gene Protein 4e-44 42
CKR_0874 YP_002471339.1 hypothetical protein FJ349556.1.orf0.gene Protein 1e-42 41
CKR_0874 YP_002471339.1 hypothetical protein CP001581.1.gene280.p Protein 2e-43 41
CKR_0874 YP_002471339.1 hypothetical protein AF253562.2.orf0.gene Protein 4e-32 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CKR_0874 YP_002471339.1 hypothetical protein VFG1702 Protein 3e-38 42
CKR_0874 YP_002471339.1 hypothetical protein VFG1563 Protein 3e-38 41