Gene Information

Name : CKR_0343 (CKR_0343)
Accession : YP_002470808.1
Strain : Clostridium kluyveri NBRC 12016
Genome accession: NC_011837
Putative virulence/resistance : Virulence
Product : hypothetical protein
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 360500 - 361168 bp
Length : 669 bp
Strand : +
Note : homology (Evalue<1e-4) to COG1136 [R] ABC-type transport systems, involved in lipoprotein release, ATPase components

DNA sequence : 
ATGGAAATTATAAAATTAAATAAGGTAAATAAAATATATTCTTCAAGACAAAATAAAGTAAATGCACTTAACAATATAAA
TTTAAGCATTAACAAAGGAGAATTAATCGCAGTAGTTGGACCATCTGGCTCAGGTAAATCTACTTTACTTAATATAATTG
GAACATTAGATAAAATTACAGATGGAGAGTATTTATTAAAAAATCAACAAGTTGAAAAGCTTAATGTTTCTCAATTGTCT
CAAATAAGAAATAAGACTTTTGGATTTGTAGTTCAGCATTTTGCATTGATTAGTGATTATACAGTATTTGAAAATATAGA
AATACCACTAGAATATGGAAAGGTTAAACGTAATGACAGAAAAATATTAATAAATGAAGTGGTTGTTAAACTAAATTTAG
ATGATAAAATAAACAAAAATGTTAAAGAACTTTCTGGTGGTCAATGTCAGAGGGTGGCCATAGCAAGAGCCATAGTTAAT
AATCCTGAAATAATACTTGCAGATGAACCTACAGGAGCATTAGATCAAAAAACTGGACAAGATGTAATGAATATTTTTAA
AGATTTAAATAGAGAAGGCAAGACAGTTATTATAGTGACCCATGATTCTAAAATAGCTGACCAATGTAACAGAATTATAA
AAATAGAAGATGGATGTATAATCGAATGA

Protein sequence : 
MEIIKLNKVNKIYSSRQNKVNALNNINLSINKGELIAVVGPSGSGKSTLLNIIGTLDKITDGEYLLKNQQVEKLNVSQLS
QIRNKTFGFVVQHFALISDYTVFENIEIPLEYGKVKRNDRKILINEVVVKLNLDDKINKNVKELSGGQCQRVAIARAIVN
NPEIILADEPTGALDQKTGQDVMNIFKDLNREGKTVIIVTHDSKIADQCNRIIKIEDGCIIE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Spaf_1862 YP_006310627.1 amino acid ABC transporter ATP-binding protein Not tested FWisland_2 Protein 2e-34 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CKR_0343 YP_002470808.1 hypothetical protein NC_012469.1.7686878. Protein 1e-48 51
CKR_0343 YP_002470808.1 hypothetical protein CP001581.1.gene598.p Protein 4e-41 42
CKR_0343 YP_002470808.1 hypothetical protein NC_012469.1.7686946. Protein 2e-31 41
CKR_0343 YP_002470808.1 hypothetical protein NC_008702.1.4606598. Protein 1e-38 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CKR_0343 YP_002470808.1 hypothetical protein VFG0869 Protein 1e-21 42