Gene Information

Name : CKR_0029 (CKR_0029)
Accession : YP_002470494.1
Strain : Clostridium kluyveri NBRC 12016
Genome accession: NC_011837
Putative virulence/resistance : Resistance
Product : hypothetical protein
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 39739 - 40428 bp
Length : 690 bp
Strand : +
Note : homology (Evalue<1e-4) to COG0745 [TK] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain

DNA sequence : 
ATGAGAAAGATTTTAATAATTGAAGATGATTTAAGTATAGCAGAACTTCAAAAGGATTATCTTGAATTAGAAGGATTCGA
AGTTACCATATGTACAGAAGGAGTAAAAGGACTAAATACGTTAAATAATAATAAATTTGATTTATTGATTCTAGATATAA
TGCTTCCTAAAATTAATGGTTATAGTATTTTGCGTAGTATACAAGATAAGAAGGACATTCCTGTACTTTTAGTTTCTGCT
AAAAAAGAGGAAATTGATAAAATTAAGGGATTCACTTTAGGAGCAGATGATTATATTACAAAGCCTTTTAGTCCTGGTGA
ACTAGTGGCAAGGGTTAAATCACATATTCAAAATTATGAAAGAATAAAAAGTAAATTTAATTTAAAGCATAATAAATTAA
TAATAAGAGGACTAGAAATACTAAAGGATTCCAGACAGGTTTTTGTAAATGGCAAGGAAATTACTTTGGCCCAAAAAGAG
TTTGATATTTTACTTTATATGGCGGAAAATCCCAACAGAGTATTCAATAGAGAAGAACTTTTTGAAAAAATATGGGGTCT
TGGCTCTATGGGAGATAATGCCACAGTTACAGTACATATAAGAAGGATACGTGAAAAGATAGAACCTTATCCGTCTAAGC
CTCAATACATAGAAACAGTGTGGGGGGCAGGTTACAGGCTTAGAGTTTAA

Protein sequence : 
MRKILIIEDDLSIAELQKDYLELEGFEVTICTEGVKGLNTLNNNKFDLLILDIMLPKINGYSILRSIQDKKDIPVLLVSA
KKEEIDKIKGFTLGADDYITKPFSPGELVARVKSHIQNYERIKSKFNLKHNKLIIRGLEILKDSRQVFVNGKEITLAQKE
FDILLYMAENPNRVFNREELFEKIWGLGSMGDNATVTVHIRRIREKIEPYPSKPQYIETVWGAGYRLRV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SSU05_0907 YP_001198273.1 NisR Not tested 89K Protein 2e-26 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CKR_0029 YP_002470494.1 hypothetical protein EU250284.1.orf4.gene Protein 4e-43 46
CKR_0029 YP_002470494.1 hypothetical protein AM180355.1.gene1830. Protein 1e-42 44
CKR_0029 YP_002470494.1 hypothetical protein AF130997.1.orf0.gene Protein 2e-38 43
CKR_0029 YP_002470494.1 hypothetical protein AF162694.1.orf4.gene Protein 2e-40 42
CKR_0029 YP_002470494.1 hypothetical protein AF155139.2.orf0.gene Protein 1e-44 42
CKR_0029 YP_002470494.1 hypothetical protein NC_014475.1.orf0.gen Protein 5e-40 41
CKR_0029 YP_002470494.1 hypothetical protein NC_005054.2598277.p0 Protein 5e-40 41