Gene Information

Name : CKR_2815 (CKR_2815)
Accession : YP_002473280.1
Strain : Clostridium kluyveri NBRC 12016
Genome accession: NC_011837
Putative virulence/resistance : Virulence
Product : hypothetical protein
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG1086
EC number : -
Position : 3174499 - 3176337 bp
Length : 1839 bp
Strand : -
Note : homology (Evalue<1e-4) to COG1086 [MG] Predicted nucleoside-diphosphate sugar epimerases

DNA sequence :
ATGCAGAAAGACAAAAAACTTATAGTGTATGACATATTTTTTCTCATAGCTTCTTTATATTTTGCTTTGTTACTTAGGTT
TGAATTTAATGTACCATCGGAATATATGATATTTTTTAAATTGTCTGTTGTTCCTGTGGTCATAGTGACCTTGATTTGCA
ATAAATTTTTTAATCTATATAACAATATATGGAAATATGCATCTGTGGAAGAGTTAATTTCTATAGTGTATTCTGTATCT
CTATCTAACATTATTTTCATAATTTACAGTTACTTCGTGAATTATAAGATTCTGGAAAATAGGTATTATAGATTTCCCTA
TACAGTACATATAATTCTCTGGATACTGTCTGTATTGGCATTGGGCGGAATAAGATTTACATATAGACTTTCTGGAGATA
AAAAGGAAGAAAATTGTACAAAAAGAAGGCATAAAAATCTCCTCATAATTGGAGCAGGAGATGCCGCTGCCATGCTTATA
AAAGAAATAAAAAAACATACAAATTTCAATTATAATATAATAGGTCTCATAGATGATGACAAATCTAAAAGGGGAAAACT
TATAAAGGGTATAGAAGTTTTAGGGGGAAGAAATGAAATAATAGAAGTATGTAAAAATAGGCAAATAGAAGAGATAATAA
TTGCAATGCCTTCTGCTGAACTCCATACAAAAAGAGAAATCATAAACATATGTAAAAATACAAAGTGCAAGCTAAAAACC
TTACCGGGTATATATGAAATGATAGATGGAAATATAAATATTACAAAACTTAGAGATGTAAATATAGAAGATTTGCTTGG
AAGAGAAGAGGTTAAATTAAATACTCAGAATATAAGCAAATATATAAAAAATAAAATTATAATGGTTACAGGGGGAGGCG
GCTCTATAGGATCTGAATTGTGCAGACAGATAGCCAAATTTCAGCCGAAACAATTACTTATATTAGATATATATGAAAAT
AATGTATATGATCTTGAGATGGAATTAAACTATAATTATATTGATTTAAATAAGAAAATAATTATCGCATCTATAAGAGA
CGGCGGCAGATTAAAAGATGTATTTAGGAAATATACCCCCCAGGTGGTTTTTCATGCAGCCGCTCATAAGCATGTTCCTC
TTATGGAAGGTAATCCTCAAGAAGCAGTAAAGAACAATATAATTGGGACTTATGAGGTTTTAAAATGCTGTGATGAATTT
AAAGTAGAGAAATTTGTACAGATAAGTACGGATAAAGCAGTGAATCCTACTAATGTTATGGGGGCTACAAAAAGGTTTTG
TGAAATAATGGTGCAGGCTTTTAATGAAGTCAGTAAAACTGAATATGTGGCTGTGAGATTTGGGAATGTACTGGGGAGTA
ATGGTTCTGTAATCCCATTATTTAAAAGGCAAATAGCCCATGGAGGACCTGTTACAGTAACTCATCCTGAAATAAATAGA
TTTTTTATGACAATTCCAGAAGCGGCTCAATTGGTAATTCAGGCAGGTGCTATAGCTGCCGGAGGAGAAATTTTTGTACT
TGATATGGGAAAACCTGTAAAAATAGTGGACTTAGCTAGAGATCTTATAACTTTGTCAGGATATGAACCGGATATGGACA
TAAAAATAGAATATACAGGTCTGAGACCGGGGGAGAAGCTGTATGAAGAATTACTTATGAATGAAGTAGCATTGACTTCT
ACAGAGCATGATAAAATATTTATAGAAAAACCTGCTAAGATAGATATGAATTTTATAGAAAAATCTATTGGTGAATTTAA
AGAAGTGTTAGATCAGGATAAAGAGCAGATAATTCAGCTTATAGAAAAAAAAGTTCCTACTTATAAGAGAAAAAAATAA

Protein sequence :
MQKDKKLIVYDIFFLIASLYFALLLRFEFNVPSEYMIFFKLSVVPVVIVTLICNKFFNLYNNIWKYASVEELISIVYSVS
LSNIIFIIYSYFVNYKILENRYYRFPYTVHIILWILSVLALGGIRFTYRLSGDKKEENCTKRRHKNLLIIGAGDAAAMLI
KEIKKHTNFNYNIIGLIDDDKSKRGKLIKGIEVLGGRNEIIEVCKNRQIEEIIIAMPSAELHTKREIINICKNTKCKLKT
LPGIYEMIDGNINITKLRDVNIEDLLGREEVKLNTQNISKYIKNKIIMVTGGGGSIGSELCRQIAKFQPKQLLILDIYEN
NVYDLEMELNYNYIDLNKKIIIASIRDGGRLKDVFRKYTPQVVFHAAAHKHVPLMEGNPQEAVKNNIIGTYEVLKCCDEF
KVEKFVQISTDKAVNPTNVMGATKRFCEIMVQAFNEVSKTEYVAVRFGNVLGSNGSVIPLFKRQIAHGGPVTVTHPEINR
FFMTIPEAAQLVIQAGAIAAGGEIFVLDMGKPVKIVDLARDLITLSGYEPDMDIKIEYTGLRPGEKLYEELLMNEVALTS
TEHDKIFIEKPAKIDMNFIEKSIGEFKEVLDQDKEQIIQLIEKKVPTYKRKK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SSP0063 YP_300153.1 capsular polysaccharide biosynthesis protein Not tested SCC15305cap Protein 1e-95 47
cap1D AAA64643.1 type 1 capsule synthesis gene Virulence SCCcap1 Protein 2e-89 47

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CKR_2815 YP_002473280.1 hypothetical protein VFG1300 Protein 7e-90 45