Gene Information

Name : CKR_2130 (CKR_2130)
Accession : YP_002472595.1
Strain : Clostridium kluyveri NBRC 12016
Genome accession: NC_011837
Putative virulence/resistance : Unknown
Product : pyridoxal biosynthesis lyase PdxS
Function : -
COG functional category : H : Coenzyme transport and metabolism
COG ID : COG0214
EC number : -
Position : 2423750 - 2424619 bp
Length : 870 bp
Strand : -
Note : with PdxT forms pyridoxal 5'-phosphate from glutamine, either ribose 5-phosphate or ribulose 5-phosphate, and either glyceraldehyde 3-phosphate or dihydroxyacetone phosphate

DNA sequence :
ATGAACAAATATGAAATAAATAAAAATTTAGCTCAAATGTTAAAAGGTGGAGTGATAATGGATGTGGTAAATAAAGAACA
AGCCGTTATTGCTGAAAAGGCAGGAGCTTGTGCTGTTATGGCTCTTGAAAGAGTACCCTCAGATATAAGAAAACAGGGTG
GAGTTGCAAGAATGTCCGATCCTAAAATGATAAAAGAAATAAAAAAGGCGGTGTCAATACCTGTTATGGCAAAAGTTAGA
ATAGGACATTTTGTAGAAGCTCAGGTATTACAGCAATTAAATATAGATTTTATAGATGAAAGTGAGGTTTTAACTCCTGC
AGATAGCTTTTATCACATAAATAAGTGGGATTTTGAAGTACCTTTTGTATGTGGAGCTAGAAATTTGGGAGAAGCACTTA
GAAGAATAGGGGAAGGAGCATCCATGATAAGGACTAAAGGAGAGGCTGGCACTGGAAATGTAGTTGAAGCTGTAACCCAT
ATGAGAACTATGATAGATGAGATAGGAAAAGTTAAAAGTGCAAAACCTGAAGAACTCATGACATTTGCAAAAGAATTTCA
GGCACTTTATGATTTAATAAAATATGTATGGGAAAATGGAAAACTTCCTGTAGTAAACTTTGCAGCAGGTGGAATTGCAA
CTCCTGCAGATGCAGCACTTATGATGCAGTTGGGGGCCGAAGGTGTATTTGTAGGCTCGGGAATATTTAAATCTGAAAAT
CCAGAAAAAAGAGCCCATGCTATTGTACTTGCCACAACTTATTACAATGATCCTAAGACAATTCAGGAAGTTTCAGAAGA
TATTGGAGAGCCCATGCCTGGAATTGAAATTGAAAACTTAAAAGAGAAATATGCAGGGCGGGGATGGTAG

Protein sequence :
MNKYEINKNLAQMLKGGVIMDVVNKEQAVIAEKAGACAVMALERVPSDIRKQGGVARMSDPKMIKEIKKAVSIPVMAKVR
IGHFVEAQVLQQLNIDFIDESEVLTPADSFYHINKWDFEVPFVCGARNLGEALRRIGEGASMIRTKGEAGTGNVVEAVTH
MRTMIDEIGKVKSAKPEELMTFAKEFQALYDLIKYVWENGKLPVVNFAAGGIATPADAALMMQLGAEGVFVGSGIFKSEN
PEKRAHAIVLATTYYNDPKTIQEVSEDIGEPMPGIEIENLKEKYAGRGW

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
DIP0227 NP_938620.1 pyridoxal biosynthesis lyase PdxS Not tested Not named Protein 7e-82 67
pdxS YP_005137204.1 pyridoxine biosynthesis protein Not tested Not named Protein 7e-82 67
pdxS YP_005141805.1 pyridoxine biosynthesis protein Not tested Not named Protein 1e-81 67