Gene Information

Name : CKR_1968 (CKR_1968)
Accession : YP_002472433.1
Strain : Clostridium kluyveri NBRC 12016
Genome accession: NC_011837
Putative virulence/resistance : Resistance
Product : hypothetical protein
Function : -
COG functional category : K : Transcription
COG ID : COG3682
EC number : -
Position : 2212770 - 2213156 bp
Length : 387 bp
Strand : -
Note : homology (Evalue<1e-4) to COG3682 [K] Predicted transcriptional regulator

DNA sequence :
ATGTTGAGTAAAACACCAAAAATATCTGATTCAGAATGGGAGATAATGAAAGTATTATGGAAAAAATCACCCCTTACTTC
TAGCGAAATAATTGAAATTTTAAAAGAATATATTTCATGGAATCCAAAGACTATTCATACTCTCATTAGTAGACTAGTAA
AAAAGGATGCCATTGAAGTGAAAAAAGATACACCTTTTTATTTATATTATCCTAAGGTGTCTGAGGAGGAATGTAGAAAA
ACAGAAACAAAATCTTTTGTCAAGAAGGTTTATAACGGCTCAATTCATCTATTAATTTCTAATTTTATAAAAAACGAAAA
ATTATCAGAGGAGGAGATAGAGGAATTGAGGAAAATACTAGATGAAAAAGATAGCAGAAGGAGATGA

Protein sequence :
MLSKTPKISDSEWEIMKVLWKKSPLTSSEIIEILKEYISWNPKTIHTLISRLVKKDAIEVKKDTPFYLYYPKVSEEECRK
TETKSFVKKVYNGSIHLLISNFIKNEKLSEEEIEELRKILDEKDSRRR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
mecI YP_039517.1 methicillin resistance regulatory protein MecI Not tested Type-II SCCmec Protein 3e-16 43
mecI BAA82218.1 methicillin resistance protein MecI Not tested Type-II SCCmec Protein 2e-16 43
mecI NP_370567.1 methicillin resistance regulatory protein Not tested Type-II SCCmec Protein 6e-16 43
mecI NP_373280.1 methicillin resistance regulatory protein Not tested Type-II SCCmec Protein 3e-16 43
mecI YP_190060.1 methicillin-resistance regulatory protein MecI Not tested Type-II SCCmec Protein 3e-16 43
mecI YP_005754043.1 methicillin resistance regulatory protein MecI Not tested Type-XI SCCmec Protein 2e-15 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CKR_1968 YP_002472433.1 hypothetical protein CP001581.1.gene771.p Protein 1e-24 48
CKR_1968 YP_002472433.1 hypothetical protein NC_002952.2861158.p0 Protein 9e-17 43
CKR_1968 YP_002472433.1 hypothetical protein NC_002758.1120003.p0 Protein 2e-16 43
CKR_1968 YP_002472433.1 hypothetical protein NC_002745.1122814.p0 Protein 1e-16 43
CKR_1968 YP_002472433.1 hypothetical protein NC_009782.5560220.p0 Protein 2e-16 43
CKR_1968 YP_002472433.1 hypothetical protein AM180355.1.gene595.p Protein 2e-18 43
CKR_1968 YP_002472433.1 hypothetical protein FR823292.1.gene6.p01 Protein 6e-16 42