Gene Information

Name : fliP (CKR_1062)
Accession : YP_002471527.1
Strain : Clostridium kluyveri NBRC 12016
Genome accession: NC_011837
Putative virulence/resistance : Virulence
Product : flagellar biosynthesis protein FliP
Function : -
COG functional category : N : Cell motility
COG ID : COG1338
EC number : -
Position : 1207239 - 1208015 bp
Length : 777 bp
Strand : +
Note : FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus

DNA sequence : 
ATGAAAGGTAAATTCCACACAAATAGTATAATTATTTCAGTTTTAGTGGTATATTTTATTATTTTCACAGTTCATACAGT
TCACGGCGCACCTACGGATTTTCCTATACCTAATATAGATATCTCTGTAGACAATGCTTCCACACCTCAGCAGTATGTCG
GTAATATAAAGTTACTTATAATGCTTACAATACTTACACTGCTTCCATCTATTATAATGATGATGACAAGTTTTGTAAGA
ATTGTAGTGGTTTTTGGATTCTTGAGAACTGCCATGGGAACTCAACAGTCTCCTCCTAATCAGGTATTAGTTGGACTTGC
TCTTTTCCTTACAGTATTCATTATGTTACCTGTTTATGGAAAAATAAATTCTGAGGCCATACAACCCTATCTGCAAAATG
GTATAACTCAAGAACAGGCTGTAGAAAGGGGAGCCAAGCCCCTTAGAGAATTTATGTTAAAGCAGACAAGACAAAAGGAT
CTTAAATTGTTTGTGGATGAAGCTAAATTAAATTATGAGGTTACAAAAGACAATGCACCTCTTTATGTGGTGATTCCTGC
GTACATAATAAGTGAATTAAAAACTGCCTTTCAAATCGGATTTTTGCTTTACATACCTTTTATGATAATAGATCTGGTGG
TAGGAAGTGTGCTTATGTCTATGGGAATGTTTATGCTTCCGCCGGTTATGATATCACTTCCATTTAAGCTTCTTTTATTT
GTAATGACAGATGGATGGTATTTATTGGTAAAATCTTTAATTATAAGTTTTTCATGA

Protein sequence : 
MKGKFHTNSIIISVLVVYFIIFTVHTVHGAPTDFPIPNIDISVDNASTPQQYVGNIKLLIMLTILTLLPSIIMMMTSFVR
IVVVFGFLRTAMGTQQSPPNQVLVGLALFLTVFIMLPVYGKINSEAIQPYLQNGITQEQAVERGAKPLREFMLKQTRQKD
LKLFVDEAKLNYEVTKDNAPLYVVIPAYIISELKTAFQIGFLLYIPFMIIDLVVGSVLMSMGMFMLPPVMISLPFKLLLF
VMTDGWYLLVKSLIISFS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 6e-33 43
hrcR AAD21321.1 HrcR Virulence Hrp PAI Protein 7e-33 43
hrcR NP_640757.1 type III secretion system protein Virulence Hrp PAI Protein 9e-33 43
hrcR YP_362153.1 type III secretion system protein Virulence Hrp PAI Protein 9e-33 43
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 5e-33 43
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 5e-33 43
hrcR BAB07862.1 HrcR Virulence Hrp PAI Protein 5e-32 42
escR AFO66317.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 7e-31 42
escR AFO66400.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 7e-31 42
hrcR YP_198720.1 type III secretion system protein Virulence Hrp PAI Protein 5e-32 42
lscR AAO18040.1 LscR Virulence TTSS locus Protein 4e-34 41
ssaR CAA68199.1 secretion system apparatus, SsaR Virulence SPI-2 Protein 4e-29 41
ssaR YP_216427.1 type III secretion system protein Virulence SPI-2 Protein 6e-29 41
ssaR NP_460384.1 type III secretion system protein Virulence SPI-2 Protein 6e-29 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
fliP YP_002471527.1 flagellar biosynthesis protein FliP VFG2338 Protein 2e-48 58
fliP YP_002471527.1 flagellar biosynthesis protein FliP VFG1259 Protein 3e-53 57
fliP YP_002471527.1 flagellar biosynthesis protein FliP VFG2494 Protein 3e-48 54
fliP YP_002471527.1 flagellar biosynthesis protein FliP VFG2016 Protein 4e-50 53
fliP YP_002471527.1 flagellar biosynthesis protein FliP VFG0394 Protein 9e-35 43
fliP YP_002471527.1 flagellar biosynthesis protein FliP VFG0044 Protein 8e-36 43
fliP YP_002471527.1 flagellar biosynthesis protein FliP VFG0188 Protein 1e-34 41
fliP YP_002471527.1 flagellar biosynthesis protein FliP VFG0519 Protein 2e-29 41