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Name : lysS (BLA_0414) Accession : YP_002469292.1 Strain : Bifidobacterium animalis AD011 Genome accession: NC_011835 Putative virulence/resistance : Unknown Product : lysyl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : 6.1.1.6 Position : 516077 - 517741 bp Length : 1665 bp Strand : + Note : class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA DNA sequence : ATGACTGAAGCGAATGAATCTGCAGACATCACTGTGGAAGAAGAGGTAGTGGCCGCCCCCGAGATGAGCACCGTGGAACG CGCGGAAATGCTGCTCAACCAGGACGAGGCGATTTTCAAGCGCGTGCAGGAGGGCGCCTCGCTCGACGAGGCCGTGGATC CGTCGAACAAGGAATTCGGACCGCTCGCGCACCCGGAGCAGGTGCAGACCCGTGTGGCCAAGCGTGCGATGATGATCAAG GACGGTATCAATCCGTACCCGGTGAATCTCGACGTCACCACGACCATCGACGCCGTGCGTGTCAAGTATGACGGCAAGCT CGAAGCGGGCGCCGAGACCGACGACATCGTCGGCGTGGCGGGCCGCGTGCTGTTCATTCGCAATGCGGGCGGACTGTGCT TCGTGCAGCTCGCCGCCGGCGATGGCACGACGATCCAGGCCATGCTCTCGAAGAAGCAGATCGGCGCGGATTCGCTCAAG CAGTTCAAGCAGCTGGTGGATCTGGGCGACCACCTGTTCGTCAAAGGTCGTGTGATCGCATCGAAGACCGGCGAGCTGTC GATCTTCGCCGATGAGTGGGCCATCGCCGCCAAGGCGCTGCAGCCGCTGCCGACGCTGCATAAGGAACTCAACGAAGACA CCCGCACGCGCAAGCCGTACATCGGCATGATCGCCGACGAGAAGATTCGCAACATGGTGCGCAATCGTTCCCGTGCGGTC GCCTCGCTGCGCCGCACCTTCGACGAACACGGATTCCTCGAGGTGGAGACTCCGATGCTGCAGACCATTCACGGTGGTGC CGCGGCTCGTCCGTTCACCACGCATATGAACGCCTTCGACCTTGATCTCTACCTGCGCATCGCGCCCGAGCTCTTCCTCA AGCGCTGCCTCGTGGGTGGCATCGAGAAGGTGTTCGAGATCAACCGCGACTTCCGCAACGAGGGCGTGGACGCCACGCAC GCGCCGGAATTCACGATGGTCGAGGCTTATGAGGCCTACGGCAACTACGACACGATCGCCAAGCTCGTCAAGGAGCTGAT CCAGAAGACCGCCATCGACGTGTTCGGCTCCACCAAGGTGACGCTGCTCGACGGCACCGAGTACGACTTCGGCGGCGAAT GGAAGACGATGAGCATGTACGACTCGCTGTCGGAGGCGCTCGGCCAGCAGATCACGCCGGAGACCAGCGTTGAGGAGCTC GGTGCGATCGCCGACCGTCTGGGCGTGGAGCGCGACGAGGTGGAGAACCACGGCAAGCTCGTCGAACACCTGTGGGAGCA CTTCTACGAAGACAAGCTGTACGAGCCGACCTTCGTGCGCGACTTCCCGGTGGAGACCTCGCCGCTTGTCAAGGCGCACC GCAGCAAGCCCGGCGTGGTGGAGAAGTGGGACCTCTACGTGCGCGGCTTCGAGCTCGCGACCGGCTACTCCGAGCTCAAC GACCCGATCGTGCAGCGTGAGCGCTTCGTGGCACAGGCCAAGGATGCTCTCGCCGGTGACGAGGAGGCCTGCGACATCGA TGAGGACTTCCTCGAGGCGCTCGGCGTCGGCATGCCGCCGGCAGGTGGCATGGGCATGGGCATCGACCGTCTGCTCATCG CGCTCACCGGCGCCACGATCCGCGAGACGATCACGTTCCCGCTGGTCAAGCCGCTCAACAACTGA Protein sequence : MTEANESADITVEEEVVAAPEMSTVERAEMLLNQDEAIFKRVQEGASLDEAVDPSNKEFGPLAHPEQVQTRVAKRAMMIK DGINPYPVNLDVTTTIDAVRVKYDGKLEAGAETDDIVGVAGRVLFIRNAGGLCFVQLAAGDGTTIQAMLSKKQIGADSLK QFKQLVDLGDHLFVKGRVIASKTGELSIFADEWAIAAKALQPLPTLHKELNEDTRTRKPYIGMIADEKIRNMVRNRSRAV ASLRRTFDEHGFLEVETPMLQTIHGGAAARPFTTHMNAFDLDLYLRIAPELFLKRCLVGGIEKVFEINRDFRNEGVDATH APEFTMVEAYEAYGNYDTIAKLVKELIQKTAIDVFGSTKVTLLDGTEYDFGGEWKTMSMYDSLSEALGQQITPETSVEEL GAIADRLGVERDEVENHGKLVEHLWEHFYEDKLYEPTFVRDFPVETSPLVKAHRSKPGVVEKWDLYVRGFELATGYSELN DPIVQRERFVAQAKDALAGDEEACDIDEDFLEALGVGMPPAGGMGMGIDRLLIALTGATIRETITFPLVKPLNN |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| lysS | YP_005163386.1 | lysyl-tRNA synthetase | Not tested | Not named | Protein | 6e-137 | 56 |
