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Name : lysS (Mpal_2116) Accession : YP_002467137.1 Strain : Methanosphaerula palustris E1-9c Genome accession: NC_011832 Putative virulence/resistance : Virulence Product : lysyl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : - Position : 2247834 - 2249369 bp Length : 1536 bp Strand : - Note : class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA DNA sequence : ATGTGTCCACATGAGAGCCTGAATTTTGATGCAGGCAGACTTGAGAAGATCGAGGCCCTGTCAGCAGGGCATCACCAACT CTATCCGTACAGTTTTGACCGGACCACCTCAATCTGCGAGATCAAGTCCCGCTTCGCTGACATCGGTCATGAGAAGAGCG AGGAGTCGGTCAAGATCGCAGGCCGGATCTACACGATTCGCAACCATGGGAAGACCGTCTTCGCCGACCTTGGGGATGAA CAGGGCCGGATCCAACTCTATATCAGAAAGAACGATGTAGGTGAGGAACAATTCTCTCTCTTCACCGAGCAGATCGACCG CGGAGATATCATCGGGGTCAGTGGTCATCTCTTCCGGACCAAACTCGGGGAGATCACCCTCTGGGTAGACCAGTTGACCC TGCTCACCAAGTCGCTCTGCCCGCTCCCGGAGAAGTTCCATGGGCTCAAGGACACCGAGACCCGGTACCGACAGCGGTAC GTGGATCTTATCATGAATGAGAAGGCCCGGGAGACATTTCGTGTTCGGTCCAGGATCATTTCGCTGATCCGGCAGTTCCT GGGCGAACGGGGTTTCCTCGAGTTTGAGACTCCGACGCTCCAACCGGTCTATGGTGGTGCGAATGCACGACCGTTCACCA CCTATCACAACTTCCTCGATCAGACCTTCTTCCTCCGGATCGCTACGGAGTTATACCTGAAGCGGCTACTGGTCGGCGGG TTTGAGAAGATCTTTGAGATCGGGAAGAATTTCCGGAATGAGGACATCGACACCAGTCATAACCCGGAGTTCACATTGAT CGAGATCTATGAGGCGTACCGGGATTACAACGACATGATGGACCTGATGGAGGAGTTCCTCTCCTCACTGGTCAATGCCA TCCATGGGTGTGACCAGGTCACGTTCGATGAGGTTGTCATCTCCTTTGCAGGACCGTGGCGGCGGATCACGATGGAGGAG GCAGTCAGGGAGTATGCAGGGATCGATGTCCTTGCCACCTCGCTCGAAGAACTGCAGGCTTTTGCGATCGAACACGCCGT CCCCGAGTACGAGAAGGCCGCCTCCCCCCGGGAGTTCCTGGTTCTCTTCTTCGAGTTCTTCGCAGAGAAGCAACTGATCC AGCCGACCTTCGTCCACGACTTCCCCATTGAGAACTCCCCGCTCGCCAAGCGGCACAGATCCAAGGAGGGGTTCACCGAA CGGTTCGAACTCTTCATCAACGGGATGGAGATCGCCAATGGTTTCTCAGAACTGAACGATCCCATCGATCAGATGAACCG GCTCGAGGCTCAGGACAGAAAGAGGTTGTCCGGGGATCTCGAAGCCCAGATGGTCGACTACGACTTCATCAACGCGCTTG GGTACGGGATGCCCCCAACCGGTGGTGTCGGGTTTGGTGTCGACCGGGTGGTAATGCTGCTGACCAACAACACCTCGATC AAGGAGGTGATCCTCTTCCCGTCGATGAAGAAACCAGTCGCAGATGCACCTCCAAATGAGGACGAATCGCAAGAAAAGCC GGCACCTCCGGCCTGA Protein sequence : MCPHESLNFDAGRLEKIEALSAGHHQLYPYSFDRTTSICEIKSRFADIGHEKSEESVKIAGRIYTIRNHGKTVFADLGDE QGRIQLYIRKNDVGEEQFSLFTEQIDRGDIIGVSGHLFRTKLGEITLWVDQLTLLTKSLCPLPEKFHGLKDTETRYRQRY VDLIMNEKARETFRVRSRIISLIRQFLGERGFLEFETPTLQPVYGGANARPFTTYHNFLDQTFFLRIATELYLKRLLVGG FEKIFEIGKNFRNEDIDTSHNPEFTLIEIYEAYRDYNDMMDLMEEFLSSLVNAIHGCDQVTFDEVVISFAGPWRRITMEE AVREYAGIDVLATSLEELQAFAIEHAVPEYEKAASPREFLVLFFEFFAEKQLIQPTFVHDFPIENSPLAKRHRSKEGFTE RFELFINGMEIANGFSELNDPIDQMNRLEAQDRKRLSGDLEAQMVDYDFINALGYGMPPTGGVGFGVDRVVMLLTNNTSI KEVILFPSMKKPVADAPPNEDESQEKPAPPA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66193.1 | putative lysil-tRNA synthetase LysU | Not tested | PAI III 536 | Protein | 3e-96 | 44 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lysS | YP_002467137.1 | lysyl-tRNA synthetase | VFG1668 | Protein | 2e-96 | 44 |
