Gene Information

Name : Dhaf_0940 (Dhaf_0940)
Accession : YP_002457439.1
Strain : Desulfitobacterium hafniense DCB-2
Genome accession: NC_011830
Putative virulence/resistance : Virulence
Product : transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 1031928 - 1032641 bp
Length : 714 bp
Strand : +
Note : PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: cth:Cthe_1288 two component transcriptional regulator

DNA sequence : 
ATGCTGTTTTTGGGGAAAGTCTTGGTGGTCGACGACGACCAGAATGTCTTGGAACTGGTCAAGTTATATGGTGAGAGAGA
GGGTTTCGAAGTGGTCGCTGTCGACGACGGGGACCTGGTGCTGGCCGCCTTCGACCGGGAGAATCCGGATGTCGTCATCC
TGGATATCATGCTTCCCGGTCAGGACGGGCTTTCTTTGTGCCGAAGATTAAGGGCGGTGCGCATGATTCCGATCATTATG
CTGACGGCCAAAGGGGAAGAAGCGGACCGTGTTCTCGGCCTGGAAATGGGTGCCGACGATTATGTTGCCAAACCTTTCAG
CCCGCGGGAACTGGTCGCCAGGATCAAAGCGGTGCTGCGGCGCAGCCAGGCGGCGGACCCGGCCACGAATTGGCAGTTGA
AATACCCCGGGCTGGAAATCCGGGCCGATATCAGGAAAGTGCTGGTGGACGCCGCGGAAAGCGAAGTGACCCCCAGAGAA
TTCGATCTGCTTTATCACCTGGCCCAGAATCCCCAGCGGGTCTTTACCAGGGAGGAATTGCTGGGGGCTGTCTGGGGATA
TGACTACTTCGGCGATCAGCGTACAGTGGATGTTCATATTCGCAGGTTGCGGACAAAGCTGGCGTCTTTGCCTCACGAAT
ACCTGCAGACTGTTTGGGGTGTAGGGTACAAGTTCACACCTCCGGTCAAGGGGGGAGAGACCGGTTTTGCGTAA

Protein sequence : 
MLFLGKVLVVDDDQNVLELVKLYGEREGFEVVAVDDGDLVLAAFDRENPDVVILDIMLPGQDGLSLCRRLRAVRMIPIIM
LTAKGEEADRVLGLEMGADDYVAKPFSPRELVARIKAVLRRSQAADPATNWQLKYPGLEIRADIRKVLVDAAESEVTPRE
FDLLYHLAQNPQRVFTREELLGAVWGYDYFGDQRTVDVHIRRLRTKLASLPHEYLQTVWGVGYKFTPPVKGGETGFA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD42044.1 hypothetical protein Not tested PAI II 536 Protein 2e-36 43
c3565 NP_755440.1 response regulator Not tested PAI I CFT073 Protein 3e-36 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Dhaf_0940 YP_002457439.1 transcriptional regulator NC_012469.1.7685629. Protein 4e-44 49
Dhaf_0940 YP_002457439.1 transcriptional regulator NC_002952.2859905.p0 Protein 4e-44 48
Dhaf_0940 YP_002457439.1 transcriptional regulator NC_007793.3914279.p0 Protein 3e-44 48
Dhaf_0940 YP_002457439.1 transcriptional regulator NC_003923.1003749.p0 Protein 4e-44 48
Dhaf_0940 YP_002457439.1 transcriptional regulator NC_002745.1124361.p0 Protein 3e-44 48
Dhaf_0940 YP_002457439.1 transcriptional regulator NC_009782.5559369.p0 Protein 3e-44 48
Dhaf_0940 YP_002457439.1 transcriptional regulator NC_002951.3237708.p0 Protein 3e-44 48
Dhaf_0940 YP_002457439.1 transcriptional regulator NC_007622.3794472.p0 Protein 3e-44 48
Dhaf_0940 YP_002457439.1 transcriptional regulator NC_002758.1121668.p0 Protein 3e-44 48
Dhaf_0940 YP_002457439.1 transcriptional regulator NC_009641.5332272.p0 Protein 3e-44 48
Dhaf_0940 YP_002457439.1 transcriptional regulator NC_013450.8614421.p0 Protein 3e-44 48
Dhaf_0940 YP_002457439.1 transcriptional regulator AE000516.2.gene3505. Protein 1e-36 48
Dhaf_0940 YP_002457439.1 transcriptional regulator HE999704.1.gene2815. Protein 7e-43 44
Dhaf_0940 YP_002457439.1 transcriptional regulator AE015929.1.gene1106. Protein 1e-29 43
Dhaf_0940 YP_002457439.1 transcriptional regulator AF155139.2.orf0.gene Protein 2e-39 43
Dhaf_0940 YP_002457439.1 transcriptional regulator CP001918.1.gene5135. Protein 6e-24 43
Dhaf_0940 YP_002457439.1 transcriptional regulator NC_002952.2859858.p0 Protein 5e-33 42
Dhaf_0940 YP_002457439.1 transcriptional regulator NC_007622.3794948.p0 Protein 5e-33 42
Dhaf_0940 YP_002457439.1 transcriptional regulator NC_003923.1003417.p0 Protein 5e-33 42
Dhaf_0940 YP_002457439.1 transcriptional regulator NC_013450.8614146.p0 Protein 5e-33 42
Dhaf_0940 YP_002457439.1 transcriptional regulator NC_002951.3238224.p0 Protein 5e-33 42
Dhaf_0940 YP_002457439.1 transcriptional regulator NC_007793.3914065.p0 Protein 5e-33 42
Dhaf_0940 YP_002457439.1 transcriptional regulator NC_002758.1121390.p0 Protein 5e-33 42
Dhaf_0940 YP_002457439.1 transcriptional regulator NC_010079.5776364.p0 Protein 5e-33 42
Dhaf_0940 YP_002457439.1 transcriptional regulator AE016830.1.gene1681. Protein 5e-38 42
Dhaf_0940 YP_002457439.1 transcriptional regulator NC_012469.1.7686381. Protein 6e-39 42
Dhaf_0940 YP_002457439.1 transcriptional regulator CP004022.1.gene3215. Protein 4e-26 42
Dhaf_0940 YP_002457439.1 transcriptional regulator CP000034.1.gene3671. Protein 6e-40 42
Dhaf_0940 YP_002457439.1 transcriptional regulator CP000034.1.gene2186. Protein 3e-33 42
Dhaf_0940 YP_002457439.1 transcriptional regulator NC_002695.1.916589.p Protein 3e-33 42
Dhaf_0940 YP_002457439.1 transcriptional regulator BAC0039 Protein 3e-33 42
Dhaf_0940 YP_002457439.1 transcriptional regulator BAC0596 Protein 5e-33 42
Dhaf_0940 YP_002457439.1 transcriptional regulator CP001138.1.gene2239. Protein 5e-33 42
Dhaf_0940 YP_002457439.1 transcriptional regulator CP001138.1.gene4273. Protein 2e-25 41
Dhaf_0940 YP_002457439.1 transcriptional regulator AM180355.1.gene1830. Protein 2e-34 41
Dhaf_0940 YP_002457439.1 transcriptional regulator CP000034.1.gene3834. Protein 2e-25 41
Dhaf_0940 YP_002457439.1 transcriptional regulator CP000647.1.gene4257. Protein 2e-25 41
Dhaf_0940 YP_002457439.1 transcriptional regulator NC_002695.1.915041.p Protein 2e-25 41
Dhaf_0940 YP_002457439.1 transcriptional regulator BAC0533 Protein 2e-25 41
Dhaf_0940 YP_002457439.1 transcriptional regulator FJ349556.1.orf0.gene Protein 3e-38 41
Dhaf_0940 YP_002457439.1 transcriptional regulator DQ212986.1.gene4.p01 Protein 3e-35 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Dhaf_0940 YP_002457439.1 transcriptional regulator VFG1563 Protein 1e-36 43
Dhaf_0940 YP_002457439.1 transcriptional regulator VFG1702 Protein 1e-36 43
Dhaf_0940 YP_002457439.1 transcriptional regulator VFG1389 Protein 2e-29 43