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Name : Dhaf_4505 (Dhaf_4505) Accession : YP_002460942.1 Strain : Desulfitobacterium hafniense DCB-2 Genome accession: NC_011830 Putative virulence/resistance : Virulence Product : polysaccharide biosynthesis protein CapD Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG1086 EC number : - Position : 4788550 - 4790382 bp Length : 1833 bp Strand : - Note : PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: drm:Dred_3050 polys DNA sequence : ATGGTTATTGACGCTGTGTTAATTAATCTGGCAGTGTTTTTAAGCTTTTATATTCGTTTTGCTGTGGATGGGGACGGAAC CATACCTGAGGAATATCTGCTCACACTGACTCATTCCGCCTGGACGGCAACCCTGATTTACTTAAGTGTGTTCTATATTT TCGGCTTGTATAACAAGCTCTGGCAATATGCCAGCATTGGCGAGCTCATATCCATCATCTTTGCCGTGACCGTCGCCGCA GCAGGGACAATCACCGTAGTGTATTTCATTGCTCCCATGCGTTTTCCCCATACAGTATCGGCTCTTATGTGGTTCAGTAC TCTCTTCTTAATTGGCGGCTCCCGTTTTATTTGGAGAATCCTTCAGGACAATATTTTTACTCCCCATGTGCCCGGCTCTC AGAATCAAGTCCTGATTATTGGCGCAGGGGATGCGGGAGTGATGGCCGCCCGGGAGCTGAAAAACAAAAACTATCGGGAA GGCCGTCCTGTGGGCTATATCGATGATGCAGCCACCAAGCAAAGACTGCAGCTCATGGGGATTCCTGTCTTAGGCACCCG CCGGGATATCCCCCGGGTCGTTAAGAACCATAATATTGATAAGATTATTATCGCCATGCCTTCGGCTTCCGGGGACGTCA TCCGGGAGATCGTGGGCATCTGCGAAAAAACCGGTGTGGATCTGAAGATCATGCCCGGTGTGTTCGACGTGGTCAGCGGT AAAGTGGATACCAAAGAAATCCGCCAGGTTCAAGTGGAGGATTTGCTGGGGCGTGAAGCCGTCACCGTCGATCTGGAGGA TGTAGCCGGTTACCTTGCAGGTGAAGCGGTCCTGATTACCGGCGGCGGCGGGTCCATCGGCTCGGAGCTTTGCCGGCAGG TCGCCCGCTTTAACCCGGCTAAACTGGTTATCGTGGGCCATGGCGAAAACAGCGTCTTTGACATCGAACAGGAACTGCGC TCGGAAAACCCGGGGTTGGATGTGGTCACGGAGATTTTGGATATCAAGGACCGGGAAAAAGTCCATCTCGTCTTCCAGCG CTATAAACCGGGTGTGGTGTTCCACGCCGCGGCCCATAAACATGTCCCTCTCATGGAAAAGAATCCGGAAGAGGCCATGA AAAATAACATTATGGGTACCAGCAATCTGGCCGAGGCAGCGGATGCCGCCAAGGTCAAGACCTTTGTCCTGATTTCCACC GATAAGGCAGTCAATCCCACCAGTATCATGGGGGCCACCAAGCGGGTGGCGGAGATGGTGATCCAGAGCATGGACAAGCG TTCTGACACCAAGTATGTGGCGGTACGTTTTGGCAATGTACTGGGCAGCCGGGGAAGCGTTATTCCCACCTTTAAGCGTC AGATTGCCAAAGGCGGGCCGGTTACAGTCACTCATCCCGATATGGTTCGCTACTTTATGACCATACCTGAAGCCTCCCAG CTGGTGATTCAAGCCGGCTCCATGGCTCAGGGGGGGGAGATTTTTATCCTGGATATGGGTCAGCCGGTCAAGATTCTGGA TCTTGCCCGGGATCTCATCCGCCTCTCCGGGTTTGAACCGGATGTGGATATCAAGATTAAATTCACAGGGATGCGCCCCG GTGAAAAACTCTTTGAAGAACTCCTTACCGCAGAAGAAGGGACTTCAGCGACGAAACATAAACGGATTTTCGTAGCCAAA CCCAATAATATCAATGTTTCACAGCTTGAGGAACTTATCCACCTCATCCGTGAGCGGGGCTCCTATCTCACCCGGGAAGA AGTTATGGGACAGTTACAAGCCATTGTGCCTACATTTAGAAAGCAAGCTTCCAAGGCAGTTGCCAATCAATAA Protein sequence : MVIDAVLINLAVFLSFYIRFAVDGDGTIPEEYLLTLTHSAWTATLIYLSVFYIFGLYNKLWQYASIGELISIIFAVTVAA AGTITVVYFIAPMRFPHTVSALMWFSTLFLIGGSRFIWRILQDNIFTPHVPGSQNQVLIIGAGDAGVMAARELKNKNYRE GRPVGYIDDAATKQRLQLMGIPVLGTRRDIPRVVKNHNIDKIIIAMPSASGDVIREIVGICEKTGVDLKIMPGVFDVVSG KVDTKEIRQVQVEDLLGREAVTVDLEDVAGYLAGEAVLITGGGGSIGSELCRQVARFNPAKLVIVGHGENSVFDIEQELR SENPGLDVVTEILDIKDREKVHLVFQRYKPGVVFHAAAHKHVPLMEKNPEEAMKNNIMGTSNLAEAADAAKVKTFVLIST DKAVNPTSIMGATKRVAEMVIQSMDKRSDTKYVAVRFGNVLGSRGSVIPTFKRQIAKGGPVTVTHPDMVRYFMTIPEASQ LVIQAGSMAQGGEIFILDMGQPVKILDLARDLIRLSGFEPDVDIKIKFTGMRPGEKLFEELLTAEEGTSATKHKRIFVAK PNNINVSQLEELIHLIRERGSYLTREEVMGQLQAIVPTFRKQASKAVANQ |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| SSP0063 | YP_300153.1 | capsular polysaccharide biosynthesis protein | Not tested | SCC15305cap | Protein | 1e-117 | 49 |
| cap1D | AAA64643.1 | type 1 capsule synthesis gene | Virulence | SCCcap1 | Protein | 5e-109 | 49 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Dhaf_4505 | YP_002460942.1 | polysaccharide biosynthesis protein CapD | VFG1300 | Protein | 1e-114 | 46 |
| Dhaf_4505 | YP_002460942.1 | polysaccharide biosynthesis protein CapD | VFG0029 | Protein | 5e-84 | 44 |
