Gene Information

Name : Dhaf_1005 (Dhaf_1005)
Accession : YP_002457501.1
Strain : Desulfitobacterium hafniense DCB-2
Genome accession: NC_011830
Putative virulence/resistance : Virulence
Product : transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 1091976 - 1092659 bp
Length : 684 bp
Strand : +
Note : PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pth:PTH_0035 response regulator

DNA sequence : 
ATGCAAAAATTGAAAGGAATCAAAATCCTGATTATTGATGATGAACCGAACATTCTGGAGTTCCTGGAAATGGGGCTGCT
GAACGAGGGCTTTGAGGTGCAGACGGCGGCTGATGGGATGACAGGAGTTACCTTGGCTAAACAGCTCCATCCCCACCTTG
TGATTCTGGATATTATGATGCCGGGAATGGATGGCTTTGAAGTCTGCCGGATGCTGAAGAAGAGTGAGAATGTGTCCATT
ATTATGCTGACCGCTAAGGATGAAGTGGAGGACCGGGTCAAGGGTTTAACCATCGGCGCTGACGATTATATGGCTAAGCC
TTTTAGCTTTGAGGAACTTCTTGCCCGCATTCACGCCCGTATCCGCAATCAATTCCCCACCCTTTTAGGAGAAGTGGTGA
TGGGCCCCTTTCGTTTGGATGATCGCCGCAAGGAAATCCAGTTTCAGGATAAGGTTCTGGAGCTTTCCCCTACAGAGTAT
GAGTTGCTCAAATTTTTAATTCTTAATCAGGGGCTGGTTTTGAGCAAGACGATGATTTTAGATAAAGTGTGGGGATATGA
TTTTGCTGGTGATGATAATATCGTGGAGGTCTACATTCGCTCCTTGAGAGAAAAACTGGGGGATAAGGAGCACCGGCTGA
TTCGTACACTGCGGGGCTCCGGGTATCGGATGGACCTGATATGA

Protein sequence : 
MQKLKGIKILIIDDEPNILEFLEMGLLNEGFEVQTAADGMTGVTLAKQLHPHLVILDIMMPGMDGFEVCRMLKKSENVSI
IMLTAKDEVEDRVKGLTIGADDYMAKPFSFEELLARIHARIRNQFPTLLGEVVMGPFRLDDRRKEIQFQDKVLELSPTEY
ELLKFLILNQGLVLSKTMILDKVWGYDFAGDDNIVEVYIRSLREKLGDKEHRLIRTLRGSGYRMDLI

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 9e-39 42
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 3e-38 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Dhaf_1005 YP_002457501.1 transcriptional regulator NC_003923.1003749.p0 Protein 3e-37 44
Dhaf_1005 YP_002457501.1 transcriptional regulator HE999704.1.gene2815. Protein 1e-37 44
Dhaf_1005 YP_002457501.1 transcriptional regulator NC_002952.2859905.p0 Protein 2e-37 43
Dhaf_1005 YP_002457501.1 transcriptional regulator NC_002951.3237708.p0 Protein 3e-37 43
Dhaf_1005 YP_002457501.1 transcriptional regulator NC_002758.1121668.p0 Protein 3e-37 43
Dhaf_1005 YP_002457501.1 transcriptional regulator NC_009641.5332272.p0 Protein 3e-37 43
Dhaf_1005 YP_002457501.1 transcriptional regulator NC_013450.8614421.p0 Protein 3e-37 43
Dhaf_1005 YP_002457501.1 transcriptional regulator NC_007793.3914279.p0 Protein 3e-37 43
Dhaf_1005 YP_002457501.1 transcriptional regulator NC_007622.3794472.p0 Protein 3e-37 43
Dhaf_1005 YP_002457501.1 transcriptional regulator NC_002745.1124361.p0 Protein 3e-37 43
Dhaf_1005 YP_002457501.1 transcriptional regulator NC_009782.5559369.p0 Protein 3e-37 43
Dhaf_1005 YP_002457501.1 transcriptional regulator NC_007622.3794948.p0 Protein 3e-35 41
Dhaf_1005 YP_002457501.1 transcriptional regulator NC_003923.1003417.p0 Protein 3e-35 41
Dhaf_1005 YP_002457501.1 transcriptional regulator NC_013450.8614146.p0 Protein 3e-35 41
Dhaf_1005 YP_002457501.1 transcriptional regulator NC_002951.3238224.p0 Protein 3e-35 41
Dhaf_1005 YP_002457501.1 transcriptional regulator AE015929.1.gene1106. Protein 5e-30 41
Dhaf_1005 YP_002457501.1 transcriptional regulator NC_007793.3914065.p0 Protein 3e-35 41
Dhaf_1005 YP_002457501.1 transcriptional regulator NC_002758.1121390.p0 Protein 3e-35 41
Dhaf_1005 YP_002457501.1 transcriptional regulator NC_010079.5776364.p0 Protein 3e-35 41
Dhaf_1005 YP_002457501.1 transcriptional regulator NC_002952.2859858.p0 Protein 3e-35 41
Dhaf_1005 YP_002457501.1 transcriptional regulator BAC0083 Protein 1e-34 41
Dhaf_1005 YP_002457501.1 transcriptional regulator BAC0638 Protein 4e-29 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Dhaf_1005 YP_002457501.1 transcriptional regulator VFG1386 Protein 2e-39 45
Dhaf_1005 YP_002457501.1 transcriptional regulator VFG0596 Protein 3e-39 42
Dhaf_1005 YP_002457501.1 transcriptional regulator VFG1390 Protein 1e-36 42
Dhaf_1005 YP_002457501.1 transcriptional regulator VFG1389 Protein 2e-32 41