Gene Information

Name : pscR (PLES_36331)
Accession : YP_002441218.1
Strain : Pseudomonas aeruginosa LESB58
Genome accession: NC_011770
Putative virulence/resistance : Virulence
Product : type III secretion system protein
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG4790
EC number : -
Position : 4024965 - 4025618 bp
Length : 654 bp
Strand : +
Note : part of a set of proteins involved in the infection of eukaryotic cells; in plant pathogens involved in the hypersensitivity response

DNA sequence : 
ATGATCCAGTTGCCCGACGAGCTCGGCCTGATCCTCGGCCTGGCCCTGCTCGCGCTGGTCCCGCTCATCGCGGTGATGGC
GACCTCCTTCATCAAGATGACCGTGGTCTTCTCGCTGCTGCGCAACGCCCTGGGCGTCCAGCAGATTCCGCCGAACATGG
CGATGTACGGGCTGGCGATCATCCTCAGCCTGTACGTGATGGCACCGGTCGGCTTCGCCACCCGCGACTACCTGCGCAAC
CACGACGTCAGCCTGAGCGACTCGGCATCGGTGGAACGCTTTCTCGACGAGGGCATGGCGCCCTACCGGAACTTCCTCAA
GCGGCAGATCCAGGAGCGCGAACACACCTTCTTCATGGAAAGCACCCGCCAGGTCTGGCCCAGCGAATACGCCGAGCGGC
TCGACCCGGACAGCCTGCTGATCCTGCTGCCGGCCTTCACCGTCAGCGAACTGACCCGTGCCTTCGAGATCGGCTTCCTG
ATCTACCTGCCCTTCATCGCCATCGACCTGATCATCTCCAACATACTCCTGGCGATGGGCATGATGATGGTGTCGCCGAT
GACCATTTCCCTGCCGTTCAAGCTGCTCCTGTTCGTCCTCCTCGACGGCTGGGCGCGGCTGACCCACGGCCTGGTCATCA
GCTACGGAGGCTGA

Protein sequence : 
MIQLPDELGLILGLALLALVPLIAVMATSFIKMTVVFSLLRNALGVQQIPPNMAMYGLAIILSLYVMAPVGFATRDYLRN
HDVSLSDSASVERFLDEGMAPYRNFLKRQIQEREHTFFMESTRQVWPSEYAERLDPDSLLILLPAFTVSELTRAFEIGFL
IYLPFIAIDLIISNILLAMGMMMVSPMTISLPFKLLLFVLLDGWARLTHGLVISYGG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lscR AAO18040.1 LscR Virulence TTSS locus Protein 3e-72 83
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 5e-46 57
ssaR NP_460384.1 type III secretion system protein Virulence SPI-2 Protein 8e-44 56
ssaR CAA68199.1 secretion system apparatus, SsaR Virulence SPI-2 Protein 6e-44 56
ssaR YP_216427.1 type III secretion system protein Virulence SPI-2 Protein 8e-44 56
yscR NP_456109.1 putative type III secretion protein Virulence SPI-2 Protein 4e-43 55
yscR NP_805090.1 type III secretion system protein Virulence SPI-2 Protein 4e-43 55
hrcR BAB07862.1 HrcR Virulence Hrp PAI Protein 7e-40 53
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 4e-40 53
hrcR NP_640757.1 type III secretion system protein Virulence Hrp PAI Protein 5e-40 53
hrcR AAD21321.1 HrcR Virulence Hrp PAI Protein 3e-40 53
hrcR YP_362153.1 type III secretion system protein Virulence Hrp PAI Protein 5e-40 53
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 4e-40 53
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 4e-40 53
hrcR YP_198720.1 type III secretion system protein Virulence Hrp PAI Protein 6e-40 53
hrcR AAT96262.1 HrcR Virulence S-PAI Protein 1e-35 50
hrcR AAT96303.1 HrcR Virulence S-PAI Protein 1e-35 50
hrcR AAT96343.1 HrcR Virulence S-PAI Protein 1e-35 50
hrcR ABA47279.1 HrcR Virulence S-PAI Protein 8e-35 49
hrcR AAT96200.1 HrcR Virulence T-PAI Protein 1e-36 48
hrcR AAT96146.1 HrcR Virulence T-PAI Protein 1e-36 48
escR CAC81847.1 EscR protein Virulence LEE II Protein 8e-36 48
unnamed AAL06354.1 EscR Virulence LEE Protein 5e-35 48
escR CAI43889.1 EscR protein Virulence LEE Protein 8e-36 48
escR AFO66317.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 6e-36 48
escR AFO66400.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 6e-36 48
ECs4583 NP_312610.1 type III secretion system protein Virulence LEE Protein 1e-35 48
escR AAC31528.1 L0049 Virulence LEE Protein 9e-36 48
escR YP_003236103.1 T3SS structure protein EscR Virulence LEE Protein 1e-35 48
escR ACU09473.1 type III secretion system protein EscR Virulence LEE Protein 9e-36 48
escR NP_290283.1 type III secretion system protein Virulence LEE Protein 1e-35 48
escR AAK26700.1 EscR Virulence LEE Protein 8e-36 48
escR YP_003223490.1 T3SS structure protein EscR Virulence LEE Protein 1e-35 48
escR AAL57527.1 EscR Virulence LEE Protein 8e-36 48
escR AAC38369.1 EscR Virulence LEE Protein 6e-35 48
escR YP_003232138.1 type III secretion system protein Virulence LEE Protein 1e-35 48
hrcR ABQ88359.1 HrcR Virulence Hrp PAI Protein 3e-36 47
hrpW AAB05075.1 HrpW Virulence Hrp PAI Protein 3e-36 47
hrcR AAB06005.2 HrcR Virulence Hrp PAI Protein 4e-34 46
hrcR NP_791222.3 type III secretion protein HrcR Virulence Hrp PAI Protein 1e-34 45
hrcR AAG33884.1 HrcR Virulence Hrp PAI Protein 1e-34 45
spaP NP_311752.1 surface presentation of antigens protein SpaP Not tested LIM Protein 1e-34 45
epaP AAZ31293.1 EpaP Virulence ETT2 Protein 4e-34 45
spaP NP_461811.1 surface presentation of antigens protein SpaP Virulence SPI-1 Protein 2e-27 43
spaP NP_457284.1 secretory protein (associated with virulence) Virulence SPI-1 Protein 5e-27 43
spaP NP_806493.1 surface presentation of antigens protein SpaP Virulence SPI-1 Protein 5e-27 43
spaP YP_217809.1 surface presentation of antigens protein SpaP Virulence SPI-1 Protein 2e-27 43
spaP AAS66865.1 SpaP Not tested SSR-2 Protein 2e-34 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
pscR YP_002441218.1 type III secretion system protein VFG0188 Protein 2e-81 99
pscR YP_002441218.1 type III secretion system protein VFG0394 Protein 6e-72 81
pscR YP_002441218.1 type III secretion system protein VFG0519 Protein 3e-44 56
pscR YP_002441218.1 type III secretion system protein VFG0044 Protein 4e-43 54
pscR YP_002441218.1 type III secretion system protein VFG0827 Protein 4e-36 48
pscR YP_002441218.1 type III secretion system protein VFG0715 Protein 3e-35 48
pscR YP_002441218.1 type III secretion system protein VFG1773 Protein 9e-37 47
pscR YP_002441218.1 type III secretion system protein VFG1012 Protein 6e-32 44
pscR YP_002441218.1 type III secretion system protein VFG0551 Protein 7e-28 43
pscR YP_002441218.1 type III secretion system protein VFG2338 Protein 5e-24 43
pscR YP_002441218.1 type III secretion system protein VFG2455 Protein 5e-32 42
pscR YP_002441218.1 type III secretion system protein VFG1259 Protein 1e-26 41