Gene Information

Name : pscJ (PLES_36061)
Accession : YP_002441191.1
Strain : Pseudomonas aeruginosa LESB58
Genome accession: NC_011770
Putative virulence/resistance : Virulence
Product : type III export protein PscJ
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG4669
EC number : -
Position : 4003332 - 4004078 bp
Length : 747 bp
Strand : -
Note : -

DNA sequence :
ATGAGGCGAACGGTGAAAGATCTGTCGCGCATGGCGCTCCTGGCGCTGGTCCTGGCGTTGGGCGGGTGCAAGGTCGAACT
CTATACCGGGATCAGCCAGAAGGAAGGTAACGAGATGCTGGCGCTGTTGCGTTCGGAGGGCGTTTCCGCGGACAAGCAGG
CGGACAAGGATGGCACCGTGCGCCTGCTGGTGGAGGAATCGGATATCGCCGAGGCGGTGGAGGTGCTCAAGCGCAAGGGC
TATCCGCGGGAGAACTTCTCCACGCTGAAGGATGTGTTTCCCAAGGACGGGCTGATTTCCTCGCCCATCGAAGAGCGCGC
GCGGCTCAACTACGCCAAGGCCCAGGAGATTTCCCATACCCTTTCCGAGATCGATGGCGTGCTGGTGGCTCGGGTCCATG
TGGTGCTGCCAGAGGAGCGCGACGGACTGGGCAGGAAGTCCTCGCCGGCATCGGCCTCGGTGTTCATCAAGCACGCCGCC
GACGTGCAACTGGATGCCTACGTGCCGCAGATCAAGCAACTGGTGAACAACGGCATCGAAGGACTCAGCTACGACCGCAT
CAGCGTGGTGCTGGTGCCGTCGGCCGGGGTCCGCCAGGTCCCGCTGGCGCCACGCTTCGAGAGTGTCTTCTCGATCCAGG
TGGCGGAGCACTCGCGCGGACGCCTGCTCGGCCTGTTCGGCCTGCTGCTGGCGTTGCTGCTGGCGAGCAACCTGGCGCAG
TTCTTCTGGCACCGGCAACGGGGCTGA

Protein sequence :
MRRTVKDLSRMALLALVLALGGCKVELYTGISQKEGNEMLALLRSEGVSADKQADKDGTVRLLVEESDIAEAVEVLKRKG
YPRENFSTLKDVFPKDGLISSPIEERARLNYAKAQEISHTLSEIDGVLVARVHVVLPEERDGLGRKSSPASASVFIKHAA
DVQLDAYVPQIKQLVNNGIEGLSYDRISVVLVPSAGVRQVPLAPRFESVFSIQVAEHSRGRLLGLFGLLLALLLASNLAQ
FFWHRQRG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lscJ AAO18027.1 LscJ Virulence TTSS locus Protein 2e-79 82
hrcJ AAB05080.1 HrcJ Virulence Hrp PAI Protein 3e-29 43
hrcJ AAC35801.1 putative hrp type III secretion pathway protein Virulence Hrp PAI Protein 4e-28 42
hrcJ AAB49174.1 HrcJ Virulence Hrp PAI Protein 5e-27 42
XC_3009 YP_244077.1 HrcJ protein Virulence Hrp PAI Protein 1e-35 42
hrcJ NP_636607.1 HrcJ protein Virulence Hrp PAI Protein 1e-35 42
YPO0263 YP_002345344.1 type III secretion system apparatus lipoprotein Virulence Not named Protein 2e-37 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
pscJ YP_002441191.1 type III export protein PscJ VFG0218 Protein 1e-93 99
pscJ YP_002441191.1 type III export protein PscJ VFG0409 Protein 9e-72 77
pscJ YP_002441191.1 type III export protein PscJ VFG0051 Protein 6e-36 46