Gene Information

Name : PLES_26511 (PLES_26511)
Accession : YP_002440244.1
Strain : Pseudomonas aeruginosa LESB58
Genome accession: NC_011770
Putative virulence/resistance : Virulence
Product : RadC family DNA repair protein
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2003
EC number : -
Position : 2847839 - 2848333 bp
Length : 495 bp
Strand : -
Note : orf03744

DNA sequence : 
ATGTCTCTCGTCGCCAACGACTCCTGCGTGGAGCCACGTTTTGCCCCCATGTCCCAATCCGATGACTGGATCATCCGGCA
AGCCATCGCGCTGCTGGAGCAGCGGGTCTTCAAGAAGGGGCCATCCCTGGAGAGGCCTGCCGCCGTCAAGGACTACCTGC
GCCTGAAACTGGCCGCCGAGCCCAATGAAGTCTTCGCCATCGTGTTCCTCAACAGCATGCACGAGGTGCTGGCCTACGAG
CCGATGTTCAGAGGCACGATCCATTCGACCTCGGTGCATGCGCGTCCGATCGTGCAGCGTGCCTTGGAACTGAATGCGGC
AGCGGTCATTTTTTCTCACCAACACCCTTCGGGCTGCACGGAGCCGTCGAGCGCGGACCGTGCGTTGACCCAAACGCTGA
GGGCCGCGTTGTCGCTGATCGACGTGAGGGTGCTGGATCACCTCATCGTCGGCCAGGGCACGCCGTACTCGTTCGCGGAA
TCCGGCCTGCTGTAG

Protein sequence : 
MSLVANDSCVEPRFAPMSQSDDWIIRQAIALLEQRVFKKGPSLERPAAVKDYLRLKLAAEPNEVFAIVFLNSMHEVLAYE
PMFRGTIHSTSVHARPIVQRALELNAAAVIFSHQHPSGCTEPSSADRALTQTLRAALSLIDVRVLDHLIVGQGTPYSFAE
SGLL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
radC AAN62140.1 putative DNA repair protein RadC Not tested PAGI-2(C) Protein 3e-55 72
radC AAN62275.1 putative DNA repair protein RadC Not tested PAGI-3(SG) Protein 2e-39 57
VC1786 NP_231421.1 DNA repair protein RadC Not tested VPI-2 Protein 4e-29 47
VC0395_A1383 YP_001217326.1 DNA repair protein RadC Not tested VPI-2 Protein 4e-29 47
VPI2_0034 ACA01849.1 DNA repair protein RadC Not tested VPI-2 Protein 2e-29 47
VC0510 NP_230161.1 DNA repair protein RadC-like protein Not tested VSP-2 Protein 9e-26 44
unnamed AAK00479.1 unknown Not tested SHI-1 Protein 7e-23 42
z1217 CAD33787.1 Z1217 protein Not tested PAI I 536 Protein 3e-23 42
c5152 NP_757000.1 radC-like protein yeeS Not tested PAI II CFT073 Protein 2e-23 42
Z1657 NP_287160.1 RadC family DNA repair protein Not tested TAI Protein 2e-22 42
unnamed CAD42098.1 hypothetical protein Not tested PAI II 536 Protein 9e-23 42
Z1217 NP_286752.1 RadC family DNA repair protein Not tested TAI Protein 4e-23 42
yeeS AAZ04458.1 putative RadC-like protein Not tested PAI I APEC-O1 Protein 1e-23 42
ECO103_3589 YP_003223446.1 radC-like protein YeeS Not tested LEE Protein 3e-23 42
unnamed CAD66203.1 hypothetical protein Not tested PAI III 536 Protein 1e-23 42
yeeS YP_854323.1 radC-like protein YeeS Not tested PAI I APEC-O1 Protein 2e-23 42
yeeS CAI43846.1 YeeS protein Not tested LEE Protein 3e-23 42
yeeS ADD91702.1 YeeS Not tested PAI-I AL862 Protein 3e-23 42
yeeS CAI43901.1 YeeS protein Not tested LEE Protein 3e-23 42
yeeS NP_838484.1 RADC family DNA repair protein Not tested SHI-1 Protein 9e-23 42
yeeS CAE85201.1 YeeS protein Not tested PAI V 536 Protein 3e-23 42
yeeS NP_708770.1 RADC family DNA repair protein Not tested SHI-1 Protein 9e-23 42
unnamed AAL08475.1 unknown Not tested SRL Protein 2e-23 42
unnamed AAL67345.1 intergenic-region protein Not tested PAI II CFT073 Protein 5e-23 42
aec73 AAW51756.1 Aec73 Not tested AGI-3 Protein 3e-23 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PLES_26511 YP_002440244.1 RadC family DNA repair protein VFG1119 Protein 1e-29 47
PLES_26511 YP_002440244.1 RadC family DNA repair protein VFG1617 Protein 4e-23 42
PLES_26511 YP_002440244.1 RadC family DNA repair protein VFG1528 Protein 1e-23 42
PLES_26511 YP_002440244.1 RadC family DNA repair protein VFG1678 Protein 5e-24 42
PLES_26511 YP_002440244.1 RadC family DNA repair protein VFG1066 Protein 1e-23 42
PLES_26511 YP_002440244.1 RadC family DNA repair protein VFG0660 Protein 2e-23 42