|
Name : wbpM (PLES_19181) Accession : YP_002439522.1 Strain : Pseudomonas aeruginosa LESB58 Genome accession: NC_011770 Putative virulence/resistance : Virulence Product : nucleotide sugar epimerase/dehydratase WbpM Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG1086 EC number : - Position : 2068506 - 2070503 bp Length : 1998 bp Strand : + Note : - DNA sequence : ATGTTGGATAACTTGCGTGGACGCCTCCTGGGATTGCCGCGCCGCCAGAAGCGCATTCTTCAGGTTGCGACGGACATCGG CCTGGTGTGGCTTTCATTGTGGCTGGCTTTCCTGGTGCGTCTCGGCACCGAAGACATGATCGATCCGTTCGGGGATCACG CCTGGCTGTTCATAGCGGCGCCTCTAACCGCCATCCCGCTCTTCATCCGCTTCGGCATGTACCGGGCGGTGATGCGCTAC CTGGGCAACGACGCCCTTATCGCGATCGCCAAGGCCGTCACCATTTCCGCGCTGGTCCTGTCGTTGCTGGTCTACTGGTA CCGCTCCCCGCCGGCGGTGGTGCCCCGTTCCCTGGTGTTCAACTACTGGTGGTTGAGCATGCTGCTGATCGGCGGCTTGC GTCTGGCCATGCGCCAGTATTTCATGGGCGACTGGTACTCTGCTGTGCAGTCGGTACCATTTCTCAATCGCCAGGATGGC CTGCCCAGGGTGGCCATCTATGGCGCGGGGGCGGCCGGCAACCAGTTGGTTGCGGCATTGCGTCTCGGTCGGGCGATGCG TCCGGTGGCGTTCATCGATGACGACAAGCAGATCGCCAACCGGGTCATCGCCGGTCTGCGGGTCTATACCGCCAAGCATA TCCGCCAGATGATCGACGAGACGGGCGCGCAGGAGGTTCTCCTGGCGATTCCTTCCGCCACTCGGGCCCGGCGCCGAGAG ATTCTCGAGTCCCTGGAGCCGTTCCCGCTGCACGTGCGCAGCATGCCTGGCTTCATGGACCTGGCCAGCGGTCGGGTCAA GGTGGACGACCTGCAGGAGGTGGACATCGCTGACCTGCTGGGGCGCGACAGCGTCGCACCGCGCAAGGAGCTGCTGGAAC GGTGCATCCGCGGTCAGGTGGTGATGGTGACCGGGGCGGGCGGTTCTATCGGTTCGGAACTCTGTCGGCAGATCATGAGT TGTTCGCCTAGCGTGCTGATCCTGTTCGAGCACAGCGAATACAACCTCTACAGCATCCATCAGGAACTGGAGCGTCGGAT CAAGCGCGAGTCGCTTTCGGTGAACCTGTTGCCGATCCTCGGTTCGGTGCGCAATCCCGAGCGCCTGGTGGACGTGATGC GTACCTGGAAGGTCAATACCGTCTACCATGCGGCGGCCTACAAGCATGTGCCGATCGTCGAGCACAACATCGCCGAGGGC GTTCTCAACAACGTGATAGGCACCTTGCATGCGGTGCAGGCCGCGGTGCAGGTCGGCGTGCAGAACTTCGTGCTGATTTC CACCGACAAGGCGGTGCGGCCGACCAATGTGATGGGCAGCACCAAGCGCCTGGCGGAGATGGTCCTTCAGGCGCTCAGCA ACGAATCGGCACCGGTGCTGTTCGGCGATCGGAAGGACGTGCATCACGTCAACAAGACCCGTTTCACCATGGTCCGCTTC GGCAACGTCCTCGGTTCGTCCGGTTCGGTCATTCCGCTGTTCCGCGAGCAGATCAAGCGCGGCGGCCCGGTGACGGTCAC CCACCCGAGCATCACCCGTTACTTCATGACCATTCCCGAGGCGGCGCAGTTGGTCATCCAGGCCGGTTCGATGGGGCAGG GCGGAGATGTATTCGTGCTGGACATGGGGCCGCCGGTGAAGATCCTGGAGCTCGCCGAGAAGATGATCCACCTGTCCGGC CTGAGCGTGCGTTCCGAGCGTTCGCCCCATGGTGACATCGCCATCGAGTTCAGTGGCCTGCGTCCTGGCGAGAAGCTCTA CGAAGAGCTGCTGATCGGTGACAACGTGAATCCCACCGACCATCCGATGATCATGCGGGCCAACGAGGAACACCTGAGCT GGGAGGCCTTCAAGGTCGTGCTGGAGCAGTTGCTGGCCGCCGTGGAGAAGGACGACTACTCGCGGGTTCGCCAGTTGCTG CGGGAAACCGTCAGCGGCTATGCGCCTGACGGTGAAATCGTCGACTGGATCTATCGCCAGAGGCGGCGAGAACCCTGA Protein sequence : MLDNLRGRLLGLPRRQKRILQVATDIGLVWLSLWLAFLVRLGTEDMIDPFGDHAWLFIAAPLTAIPLFIRFGMYRAVMRY LGNDALIAIAKAVTISALVLSLLVYWYRSPPAVVPRSLVFNYWWLSMLLIGGLRLAMRQYFMGDWYSAVQSVPFLNRQDG LPRVAIYGAGAAGNQLVAALRLGRAMRPVAFIDDDKQIANRVIAGLRVYTAKHIRQMIDETGAQEVLLAIPSATRARRRE ILESLEPFPLHVRSMPGFMDLASGRVKVDDLQEVDIADLLGRDSVAPRKELLERCIRGQVVMVTGAGGSIGSELCRQIMS CSPSVLILFEHSEYNLYSIHQELERRIKRESLSVNLLPILGSVRNPERLVDVMRTWKVNTVYHAAAYKHVPIVEHNIAEG VLNNVIGTLHAVQAAVQVGVQNFVLISTDKAVRPTNVMGSTKRLAEMVLQALSNESAPVLFGDRKDVHHVNKTRFTMVRF GNVLGSSGSVIPLFREQIKRGGPVTVTHPSITRYFMTIPEAAQLVIQAGSMGQGGDVFVLDMGPPVKILELAEKMIHLSG LSVRSERSPHGDIAIEFSGLRPGEKLYEELLIGDNVNPTDHPMIMRANEEHLSWEAFKVVLEQLLAAVEKDDYSRVRQLL RETVSGYAPDGEIVDWIYRQRRREP |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| cap1D | AAA64643.1 | type 1 capsule synthesis gene | Virulence | SCCcap1 | Protein | 1e-85 | 42 |
| SSP0063 | YP_300153.1 | capsular polysaccharide biosynthesis protein | Not tested | SCC15305cap | Protein | 3e-81 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| wbpM | YP_002439522.1 | nucleotide sugar epimerase/dehydratase WbpM | VFG0029 | Protein | 3e-118 | 46 |
