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Name : lysS (PLES_12841) Accession : YP_002438887.1 Strain : Pseudomonas aeruginosa LESB58 Genome accession: NC_011770 Putative virulence/resistance : Virulence Product : lysyl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : - Position : 1395117 - 1396622 bp Length : 1506 bp Strand : + Note : class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA DNA sequence : ATGAGCGACCAACAACTCGACCAGCACGAACTGCAACAGGAAGAAAACAAGCTGATCGCCCAGCGCAAGGAAAAACTTGC CGCCGTGCGCGAAGCCCGGGCCATCGCCTTCCCCAACGACTTCCGCCGCGACGCCTACTTCGCGGACCTGCAGAAACAGT ACGCCGACAAGACCAAGGAAGAGCTGGAAGCCGCAGCGATCCCGGTCAAGGTGGCCGGTCGGATCATGCTCAACCGCGGT TCCTTCATCGTCCTCCAGGACAGCAGCGAGCGCCTGCAGGTCTACGTCAACCGCAAGACCCTGCCGGAAGAAACCCTGGC CGAGATCAAGACCTGGGACCTGGGCGACATCATCGGCGCCGAAGGCGTGCTGGCCCGCTCGGGCAAGGGCGACCTGTACG TCGACATGACCAGCGTGCGCCTGCTGACCAAGTCGCTGCGTCCGCTGCCGGACAAGCACCATGGCCTGACCGACACCGAG CAGCGCTACCGCCAGCGCTACGTCGACCTGATGGTCAACGAGGAAACCCGCCACACCTTCCGCGTGCGTTCCCAGGTCAT CGCCCACATCCGCCGTTTCCTCAGCGAGCGCGGTTTCCTCGAAGTGGAGACCCCGATGCTGCAGACCATCCCCGGCGGCG CCGCGGCCAAGCCGTTCGAGACCCATCACAACGCGCTGGACATGGCCATGTTCCTGCGCATCGCCCCGGAGCTGTACCTC AAGCGCCTGGTGGTCGGCGGTTTCGAGAAGGTCTTCGAGATCAACCGCAACTTCCGTAACGAAGGCGTCTCGACCCGGCA CAACCCCGAGTTCACCATGCTCGAGTTCTACCAGGCCTACGCCGACTACGAAGACAACATGGACCTGACCGAGGAACTGT TCCGCGAACTGGCCCAGGCGGTACTCGGTACCACCGACGTGCCCTACGGCGACAAGGTCTTCCACTTCGGCGAGCCGTTC GTGCGCCTGTCGGTGTTCGATTCGATCCTCAAGTACAACCCGGAGATCACCGCCGCCGACCTCAACGACGTCGAGAAGGC GCGGGCCATCGCCAAGAAGGCCGGCGCCAAGGTCCTCGGCCACGAAGGCCTGGGCAAGCTGCAGGTGATGATTTTCGAGG AACTGGTGGAGCACAAGCTGGAGCAGCCGCACTTCATCACCCGCTACCCCTTCGAGGTTTCGCCGCTGGCCCGCCGCAAC GACGAAGACCCGAGCGTCACCGACCGCTTCGAGCTGTTCATCGGCGGCCGCGAGATCGCCAATGCCTATTCCGAGCTGAA CGACGCCGAGGACCAGGCCGAGCGCTTCATGTTGCAGGTCAAGGAGAAGGACGCCGGCGACGACGAGGCGATGCACTACG ACGCCGACTTCATCAATGCCCTGGAATACGGCATGCCGCCGACCGCCGGCGAAGGCATCGGCATCGACCGCCTGGTGATG CTGCTGACCAACTCGCCGTCGATCCGCGACGTGATCCTGTTCCCGCACATGCGCCCGCAGGCCTGA Protein sequence : MSDQQLDQHELQQEENKLIAQRKEKLAAVREARAIAFPNDFRRDAYFADLQKQYADKTKEELEAAAIPVKVAGRIMLNRG SFIVLQDSSERLQVYVNRKTLPEETLAEIKTWDLGDIIGAEGVLARSGKGDLYVDMTSVRLLTKSLRPLPDKHHGLTDTE QRYRQRYVDLMVNEETRHTFRVRSQVIAHIRRFLSERGFLEVETPMLQTIPGGAAAKPFETHHNALDMAMFLRIAPELYL KRLVVGGFEKVFEINRNFRNEGVSTRHNPEFTMLEFYQAYADYEDNMDLTEELFRELAQAVLGTTDVPYGDKVFHFGEPF VRLSVFDSILKYNPEITAADLNDVEKARAIAKKAGAKVLGHEGLGKLQVMIFEELVEHKLEQPHFITRYPFEVSPLARRN DEDPSVTDRFELFIGGREIANAYSELNDAEDQAERFMLQVKEKDAGDDEAMHYDADFINALEYGMPPTAGEGIGIDRLVM LLTNSPSIRDVILFPHMRPQA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66193.1 | putative lysil-tRNA synthetase LysU | Not tested | PAI III 536 | Protein | 3e-136 | 59 |
| lysS | YP_005163386.1 | lysyl-tRNA synthetase | Not tested | Not named | Protein | 6e-78 | 42 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lysS | YP_002438887.1 | lysyl-tRNA synthetase | VFG1668 | Protein | 2e-136 | 59 |
