Gene Information

Name : DvMF_2439 (DvMF_2439)
Accession : YP_002436848.1
Strain : Desulfovibrio vulgaris Miyazaki F
Genome accession: NC_011769
Putative virulence/resistance : Virulence
Product : type III secretion system protein
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG4790
EC number : -
Position : 3074032 - 3074682 bp
Length : 651 bp
Strand : +
Note : part of a set of proteins involved in the infection of eukaryotic cells; in plant pathogens involved in the hypersensitivity response

DNA sequence : 
GTGACCGGCACCATGCCGCTCTATTACATAGCGGGCATGGCGCTGCTGGGGCTTGCGCCGTTCTTCCTGATGATGGTGAC
CTCCTACGTGAAGATCGTGGTGGTCACCTCGCTGGTGCGCAACGCGCTGGGCGTGCAGCAGGTGCCGCCCGCCATGGTCA
TGAACGGCCTGGCCATCATCCTCAGCATCTTCATCATGGCCCCCATGGTGGAAAGCACGCTGGACATCCTGAAGACGGTG
CGGGTGAGCGAACAGCCGGAGCCGCGCGAGGTGGTGGAACTGCTGGACAGGGCCTCGCCCCCTCTGCGCGACTTTCTTTC
GCGCAATGCCGACGACAAGGTGATCACCGCGTTCATGGGCACGGCCAAGCGCATCTGGCCCAAGGAACGGCACGACACCA
TCCGGCGCGAGAACCTGCTCATCCTCGTGCCCGCCTTCACCATTTCGGAGCTGACCAAGGCCTTCCAGATAGGCTTTCTG
CTGTACCTGCCCTTCGTGGCCATAGACCTGATCATTTCCAACATCCTGCTGGCCATGGGCATGATGATGGTTTCGCCCAT
GACCATTTCGCTGCCCTTCAAGCTGCTGCTGTTCGTCACCCTGGACGGGTGGCTGAAGATCAGCCAGGGCCTGCTGCTCA
GCTACAAGTAA

Protein sequence : 
MTGTMPLYYIAGMALLGLAPFFLMMVTSYVKIVVVTSLVRNALGVQQVPPAMVMNGLAIILSIFIMAPMVESTLDILKTV
RVSEQPEPREVVELLDRASPPLRDFLSRNADDKVITAFMGTAKRIWPKERHDTIRRENLLILVPAFTISELTKAFQIGFL
LYLPFVAIDLIISNILLAMGMMMVSPMTISLPFKLLLFVTLDGWLKISQGLLLSYK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lscR AAO18040.1 LscR Virulence TTSS locus Protein 6e-50 57
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 4e-42 52
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 2e-49 51
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 2e-49 51
hrcR BAB07862.1 HrcR Virulence Hrp PAI Protein 1e-49 50
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 1e-49 50
hrcR NP_640757.1 type III secretion system protein Virulence Hrp PAI Protein 2e-49 50
hrcR YP_362153.1 type III secretion system protein Virulence Hrp PAI Protein 2e-49 50
hrcR AAD21321.1 HrcR Virulence Hrp PAI Protein 1e-49 50
ssaR CAA68199.1 secretion system apparatus, SsaR Virulence SPI-2 Protein 1e-42 50
yscR NP_456109.1 putative type III secretion protein Virulence SPI-2 Protein 4e-42 50
yscR NP_805090.1 type III secretion system protein Virulence SPI-2 Protein 4e-42 50
ssaR YP_216427.1 type III secretion system protein Virulence SPI-2 Protein 1e-42 50
ssaR NP_460384.1 type III secretion system protein Virulence SPI-2 Protein 1e-42 50
hrcR YP_198720.1 type III secretion system protein Virulence Hrp PAI Protein 1e-49 50
hrcR AAT96262.1 HrcR Virulence S-PAI Protein 2e-40 48
hrcR AAT96303.1 HrcR Virulence S-PAI Protein 2e-40 48
hrcR AAT96343.1 HrcR Virulence S-PAI Protein 2e-40 48
hrcR ABA47279.1 HrcR Virulence S-PAI Protein 5e-41 46
unnamed AAL06354.1 EscR Virulence LEE Protein 1e-38 46
hrcR ABQ88359.1 HrcR Virulence Hrp PAI Protein 2e-35 45
hrpW AAB05075.1 HrpW Virulence Hrp PAI Protein 2e-35 45
hrcR AAT96146.1 HrcR Virulence T-PAI Protein 3e-36 45
hrcR AAT96200.1 HrcR Virulence T-PAI Protein 3e-36 45
escR AFO66317.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 3e-38 45
escR AFO66400.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 3e-38 45
hrcR NP_791222.3 type III secretion protein HrcR Virulence Hrp PAI Protein 1e-36 44
escR CAC81847.1 EscR protein Virulence LEE II Protein 4e-40 44
escR YP_003236103.1 T3SS structure protein EscR Virulence LEE Protein 6e-40 44
escR CAI43889.1 EscR protein Virulence LEE Protein 4e-40 44
escR NP_290283.1 type III secretion system protein Virulence LEE Protein 6e-40 44
escR AAC31528.1 L0049 Virulence LEE Protein 4e-40 44
escR ACU09473.1 type III secretion system protein EscR Virulence LEE Protein 4e-40 44
ECs4583 NP_312610.1 type III secretion system protein Virulence LEE Protein 2e-39 44
escR AAK26700.1 EscR Virulence LEE Protein 4e-40 44
escR YP_003223490.1 T3SS structure protein EscR Virulence LEE Protein 6e-40 44
escR AAL57527.1 EscR Virulence LEE Protein 4e-40 44
escR YP_003232138.1 type III secretion system protein Virulence LEE Protein 6e-40 44
hrcR AAG33884.1 HrcR Virulence Hrp PAI Protein 9e-37 43
escR AAC38369.1 EscR Virulence LEE Protein 5e-39 43
hrcR AAB06005.2 HrcR Virulence Hrp PAI Protein 2e-40 41
spaP AAS66865.1 SpaP Not tested SSR-2 Protein 8e-37 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
DvMF_2439 YP_002436848.1 type III secretion system protein VFG0188 Protein 3e-53 59
DvMF_2439 YP_002436848.1 type III secretion system protein VFG0394 Protein 2e-49 57
DvMF_2439 YP_002436848.1 type III secretion system protein VFG0044 Protein 6e-46 51
DvMF_2439 YP_002436848.1 type III secretion system protein VFG0519 Protein 5e-43 50
DvMF_2439 YP_002436848.1 type III secretion system protein VFG0827 Protein 2e-40 44
DvMF_2439 YP_002436848.1 type III secretion system protein VFG0715 Protein 2e-39 43
DvMF_2439 YP_002436848.1 type III secretion system protein VFG1773 Protein 5e-36 41
DvMF_2439 YP_002436848.1 type III secretion system protein VFG2338 Protein 6e-31 41
DvMF_2439 YP_002436848.1 type III secretion system protein VFG1259 Protein 4e-32 41