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Name : DvMF_2415 (DvMF_2415) Accession : YP_002436824.1 Strain : Desulfovibrio vulgaris Miyazaki F Genome accession: NC_011769 Putative virulence/resistance : Virulence Product : type III secretion protein, HrcV family Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG4789 EC number : - Position : 3053406 - 3055496 bp Length : 2091 bp Strand : - Note : TIGRFAM: type III secretion protein, HrcV family; PFAM: type III secretion FHIPEP protein; KEGG: lip:LI0548 type III secretion pore protein DNA sequence : ATGCTTGCCCGCGCCAACACCGCCGTGAATGCCGTTACCCGGCACAACGACCTGGCCATCGTCGCCCTGCTGGTGGTGGT GGTTGCGCTGATGATCCTGCCGTTGCCCACCCCGCTGGTGGACACGCTGATCGGCGCCAACATGGCCCTTTCTTTCGTCA TGCTGATGATGTCCATGTACGTGCGCAGCGTGCTGGACTTTTCGGTGTTTCCCACCATGCTGCTGTTCACCACGCTGTTC CGCGTGGGGCTGAACATCACCACCACCCGGCTCATCCTGCTGCAGGCCGACGCGGGCGAAATCATCTTCGTGTTCGGCGA ATACGCGCTTGGCGGCAACTTCGTGGTGGGCGCGGTGGTCTTCGTCATCCTGACCATCGTGCAGTTCCTGGTCATCGCCA AGGGCGCCGAGCGCGTGGCCGAAGTGGGCGCGCGCTTCACCCTGGACGCCATGCCCGGCAAGCAGATGTCCATCGACGCG GACATGCGCGCGGGCGTCATCGACATGGAGGAAGCCCAGCGCCGCCGCAACATGGTGTCGCAGGAAAGCCAGATGTACGG CGCCATGGACGGCGCCATGAAGTTCGTCAAGGGCGACAGCATCGCCGGCATGATCGTGGCCGTGGTCAACATCGTGGGCG GCACGGTCATCGGCATCACCCAGCATGGCATGACCGGGGCCGACGCCCTGCACACCTACGGCATCCTGACCATCGGCGAC GGCCTGGTCTCGCAGATACCCTCGCTGCTGGTGTCCATTTCGGCGGGCATCCTGATCACCCGCACGGGCGATTCGGGCGG CAACGTGGGGGCGCAGATCGGCGGTCAGATCTTCGGCCAGCCAAAGGCGCTGCTGATGGCGGGCGGGCTGGTGTTCCTGT TCGCGCTGGTGCCGGGCTTTCCCAAGCCGCAGCTGTTCGGGCTGGCCCTTGCCATCGGCGGGTTCGGCTACGTGCTGCAA CGCATGGCCGAGGCCCCCGTGGCCGCCGACCCCAGGGCGGAACTGAGCCGTTCGCTGGCCCCGGCCGCACGACCCCGCAC GCCGCGCCCCGGCGCGGCGCAGCCCGGCGACGATTTCGCCCCCACCGTGCCCATCATCCTGGACCTTTCGGCGGAACTGG GCGAGGCCCTGCACTACGATGCCCTGAACGAGGAGCTGATCAACCTGCGCCGGGCGTTGTACTTCGACCTCGGCGTGCCG TTCCCGGGCATCAACATCCGGCCCAGTCCCGGTCTGGAAGGGCTTTCCTACGTACTGAACCTGAACGAAATCCCCATGTC GCGCGGCACGCTGGAACGAGGCATGTCCCTGGCCCGCGACACCAGCGAAAACCTGGCCATGCTGGGCGTCAACGCAAGGA CGGGCGAACGCTTCCTGCCCGACGTGGACCCCCTGTGGGTGCCCGACGAGCAGCTGCACCTGCTGGACAAGGCGGGCATA GGGCACATGAGCCACGCGCGCATCCTGGCCTACCACCTGTCGCTGGTGCTTTCGCGCCACGCCAGCAACTTCCTGGGCAT GCAGGAGGCCAAGTACCTGCTCGACCGCATGGAAGAACGCGCGCCCGACCTGGTGCGCGAGGCAACGCGCCTGCTGCCGG TGCAGCGCATCGCGGAAATCTTCCAGCGCCTGGTGCAGGAACAGATTTCCATCCGCGACCTGCGCAACATCCTGGAAGCG CTCATCGAATGGAGCCCCAAGGAAAAGGACACGGTCATGCTGACCGAGTACGTCCGCGGCGCGCTGAAGCGGCAGATAAG CTACATGCATTCGCGCGGGCAGAACATGCTGCCCGCCATCCTGCTGGACCCGCAGGTGGAGGAAACCATCCGCAAGGCCA TCCGCCAGACCTCGGCGGGGGCGTTCCTGGCGCTGGAGCCTTCGGTGACCGAGCGGTTCATGAAGGCCGTGGGCGATGCC GCCGGGCGCTACGCAAGCCACGCCCAGAAACCGGTGATCATGACCTCCATGGACATCCGGCGCTACGTGCGCAGGCTGAT AGAGGGCGACCACTACGGGCTGGCGGTGATCTCGTACCAGGAACTGACGCCCGAAATATCGGTGCAGCCGGTCAACCGCA TCCGGCTGTAG Protein sequence : MLARANTAVNAVTRHNDLAIVALLVVVVALMILPLPTPLVDTLIGANMALSFVMLMMSMYVRSVLDFSVFPTMLLFTTLF RVGLNITTTRLILLQADAGEIIFVFGEYALGGNFVVGAVVFVILTIVQFLVIAKGAERVAEVGARFTLDAMPGKQMSIDA DMRAGVIDMEEAQRRRNMVSQESQMYGAMDGAMKFVKGDSIAGMIVAVVNIVGGTVIGITQHGMTGADALHTYGILTIGD GLVSQIPSLLVSISAGILITRTGDSGGNVGAQIGGQIFGQPKALLMAGGLVFLFALVPGFPKPQLFGLALAIGGFGYVLQ RMAEAPVAADPRAELSRSLAPAARPRTPRPGAAQPGDDFAPTVPIILDLSAELGEALHYDALNEELINLRRALYFDLGVP FPGINIRPSPGLEGLSYVLNLNEIPMSRGTLERGMSLARDTSENLAMLGVNARTGERFLPDVDPLWVPDEQLHLLDKAGI GHMSHARILAYHLSLVLSRHASNFLGMQEAKYLLDRMEERAPDLVREATRLLPVQRIAEIFQRLVQEQISIRDLRNILEA LIEWSPKEKDTVMLTEYVRGALKRQISYMHSRGQNMLPAILLDPQVEETIRKAIRQTSAGAFLALEPSVTERFMKAVGDA AGRYASHAQKPVIMTSMDIRRYVRRLIEGDHYGLAVISYQELTPEISVQPVNRIRL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| lssD | AAO18050.1 | LssD | Virulence | TTSS locus | Protein | 3e-156 | 52 |
| YPO0266 | YP_002345347.1 | secretion system apparatus protein SsaV | Virulence | Not named | Protein | 3e-106 | 43 |
| hrcV | AAP34346.1 | HrcV | Virulence | Hrp PAI | Protein | 2e-81 | 42 |
| hrcV | YP_362156.1 | HrcV protein | Virulence | Hrp PAI | Protein | 3e-82 | 42 |
| hrcV | NP_640760.1 | HrcV protein | Virulence | Hrp PAI | Protein | 1e-81 | 42 |
| hrcV | BAB07859.1 | HrcV | Virulence | Hrp PAI | Protein | 1e-79 | 41 |
| hrcV | YP_198723.1 | protein HrcV | Virulence | Hrp PAI | Protein | 2e-79 | 41 |
| XC_3013 | YP_244081.1 | HrcV protein | Virulence | Hrp PAI | Protein | 2e-86 | 41 |
| hrcV | NP_636603.1 | protein HrcV | Virulence | Hrp PAI | Protein | 2e-86 | 41 |
| invA | AAS66860.1 | InvA | Not tested | SSR-2 | Protein | 6e-96 | 41 |
| ssaV | CAA70536.1 | secretion system apparatus | Virulence | SPI-2 | Protein | 4e-95 | 41 |
| ssaV | NP_460379.1 | secretion system apparatus protein SsaV | Virulence | SPI-2 | Protein | 5e-95 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| DvMF_2415 | YP_002436824.1 | type III secretion protein, HrcV family | VFG0064 | Protein | 7e-162 | 56 |
| DvMF_2415 | YP_002436824.1 | type III secretion protein, HrcV family | VFG0384 | Protein | 9e-155 | 52 |
| DvMF_2415 | YP_002436824.1 | type III secretion protein, HrcV family | VFG0198 | Protein | 1e-149 | 52 |
| DvMF_2415 | YP_002436824.1 | type III secretion protein, HrcV family | VFG2126 | Protein | 1e-119 | 46 |
| DvMF_2415 | YP_002436824.1 | type III secretion protein, HrcV family | VFG0514 | Protein | 2e-95 | 41 |
