Gene Information

Name : DvMF_2290 (DvMF_2290)
Accession : YP_002436700.1
Strain : Desulfovibrio vulgaris Miyazaki F
Genome accession: NC_011769
Putative virulence/resistance : Virulence
Product : flagellar protein export ATPase FliI
Function : -
COG functional category : N : Cell motility
COG ID : COG1157
EC number : -
Position : 2877968 - 2879374 bp
Length : 1407 bp
Strand : +
Note : KEGG: dde:Dde_0350 ATPase FliI/YscN; TIGRFAM: ATPase, FliI/YscN family; flagellar protein export ATPase FliI; PFAM: H+transporting two-sector ATPase alpha/subunit beta central region; SMART: ATPase AAA

DNA sequence :
GTGACTCCGCCCGACAGCCCCCGCGACAGTCGTCTGTCGGGGCTCGACCCTGCCGCCTGCCAGCGCCTGCTGGGCGAGGT
GCAGGCCATGCAGACCTACGGCAAGGTCACCAAGGTGGTGGGCCTGGTTGCCGAAGGCTGCGGCATAAAGGCCCCGCTGG
GAGCGGTGTGCCACATGCTGCCCGAAGGGTGCGAGACCGGCCTTGTGGGCGGTGCCGTGCGGCAGGGCGCCGCGCCAGAC
CCTGCCACCTGCGAGGGCATTGCCGCCGAGGTGGTGGGCTTTCGCGACGGCAACCTGCTGTTCATGCCCTATGGCGACCT
GCGCGGCATCCGCCCCGGCAGCCTCATCCGCAACACCAGCCTGCCCCCCGTCTTTCCCGTGGGCGACGCCCTGCTGGGCC
GCGCCTTCGACGCCTTCGGCGCGCCGCTGGACAGCGGTGCCCATGTGGTCACCACCGGCGTGGCCCCCCTGTACGCCTCG
CCCCCCAACCCGCTGGCCCGCCCCCGCATTTCCGACCCGCTGGACGTGGGCGTGCGCGTCATCAACAGCCTGCTCACCCT
GGGCAAGGGGCAGCGTGTGGGCATCATGGCCGGTTCGGGCGTCGGCAAATCGACGCTCATGGGCATGATGGCCCGGTACA
CCGTGGCCGACGTGAACGTCATCGGCCTCATCGGCGAACGTGGCCGCGAGGTGGTGGAGTTCATGGAAAAGGATCTGGGG
CCGGAAGGCATGGCCCGGTCCGTGCTCATCGTGGCCACGTCCGACCAGTCGCCCTTGGTGCGCATGCGCGCCGCCTATGC
CGCCACCGCCGTGGCCGAGTTTTTCCGCGACCAGGGCAAGGACGTGCTGCTGATGATGGATTCGGTGACGCGCTTCGCCA
TGGCCGCGCGCGAGGTGGGGCTGGCCGTGGGCGAACCGCCCACGACAAAGGGCTACACCCCCACCGTGTTCGCCCAGTTG
CCCAAGCTGCTGGAACGCGCGGGCCGCAGCGAAAAGGGCACCATCACCGGCATATACACCGTGCTCGTGGACGGCGACGA
CTTCAACGAACCCATTGCCGACGCGGTGCGCTCCATTCTGGACGGGCACATCGTGCTTACCCGCGACCTGGCCGACATGG
GCCACTTTCCCGCCATCGACGTGCTGCGCTCCATCAGCCGGTTGCGCAGCGACATCTGCGCCAAGAACGTGGTGGACGCG
GGCCGCGTGATCACCCGGCACCTGGCCACCTTCCGCAAGGCCGAGGACATGATCAACATCGGGGCCTACGCGCAGGGCAG
CAACCCGGACATCGACAAGGCCATCGCCATGAACGGCCCCATCAACGCCTTTCTGCGCCAGGACGTGACCGACGCCGCGC
CGCTGGCCGATTCGTTCGCGCAGTTGCAAGGGTTGGCCGCCGGGTAG

Protein sequence :
MTPPDSPRDSRLSGLDPAACQRLLGEVQAMQTYGKVTKVVGLVAEGCGIKAPLGAVCHMLPEGCETGLVGGAVRQGAAPD
PATCEGIAAEVVGFRDGNLLFMPYGDLRGIRPGSLIRNTSLPPVFPVGDALLGRAFDAFGAPLDSGAHVVTTGVAPLYAS
PPNPLARPRISDPLDVGVRVINSLLTLGKGQRVGIMAGSGVGKSTLMGMMARYTVADVNVIGLIGERGREVVEFMEKDLG
PEGMARSVLIVATSDQSPLVRMRAAYAATAVAEFFRDQGKDVLLMMDSVTRFAMAAREVGLAVGEPPTTKGYTPTVFAQL
PKLLERAGRSEKGTITGIYTVLVDGDDFNEPIADAVRSILDGHIVLTRDLADMGHFPAIDVLRSISRLRSDICAKNVVDA
GRVITRHLATFRKAEDMINIGAYAQGSNPDIDKAIAMNGPINAFLRQDVTDAAPLADSFAQLQGLAAG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
escN AFO66300.1 putative LEE-encoded type III secretion system ATPase Virulence SESS LEE Protein 4e-78 49
escN AFO66415.1 putative LEE-encoded type III secretion system ATPase Virulence SESS LEE Protein 4e-78 49
escN YP_003232153.1 T3SS structure protein EscN Virulence LEE Protein 3e-77 49
escN AAC38383.1 EscN Virulence LEE Protein 2e-77 49
ssaN NP_456113.1 putative type III secretion ATP synthase Virulence SPI-2 Protein 2e-73 48
ssaN NP_805086.1 type III secretion system ATPase Virulence SPI-2 Protein 2e-73 48
hrcN AAR25633.1 type III secretion cytoplasmic ATPase HrcN Not tested Not named Protein 6e-64 48
escN YP_003223475.1 translocator EscN Virulence LEE Protein 3e-77 48
escN AAK26715.1 EscN Virulence LEE Protein 6e-77 48
escN AAL57542.1 EscN Virulence LEE Protein 6e-77 48
escN CAC81862.1 EscN protein Virulence LEE II Protein 2e-77 48
escN CAI43874.1 EscN protein Virulence LEE Protein 2e-77 48
hrcN AAT96141.1 HrcN Virulence T-PAI Protein 7e-70 48
hrcN AAT96195.1 HrcN Virulence T-PAI Protein 6e-70 48
escN AAC31513.1 L0034 Virulence LEE Protein 7e-77 48
unnamed ACU09458.1 type III secretion apparatus H+-transporting two-sector ATPase Virulence LEE Protein 7e-77 48
escN YP_003236088.1 translocator EscN Virulence LEE Protein 1e-76 48
escN NP_290268.1 hypothetical protein Virulence LEE Protein 1e-76 48
unnamed AAL06369.1 EscN Virulence LEE Protein 1e-75 48
ECs4568 NP_312595.1 EscN Virulence LEE Protein 1e-76 48
hrcN AAG33879.1 HrcN Virulence Hrp PAI Protein 1e-69 47
ssaN NP_460380.1 type III secretion system ATPase Virulence SPI-2 Protein 9e-73 47
ssaN YP_216423.1 type III secretion system ATPase Virulence SPI-2 Protein 5e-73 47
ssaN CAA70537.1 secretion system apparatus Virulence SPI-2 Protein 7e-73 47
hrcN NP_791227.1 type III secretion cytoplasmic ATPase HrcN Virulence Hrp PAI Protein 1e-69 47
hrpB6 BAB07852.1 HrpB6 Virulence Hrp PAI Protein 4e-83 46
hrpB6 AAF61281.1 HrpB6 Virulence Hrp PAI Protein 4e-83 46
hrcN NP_640767.1 type III secretion system ATPase Virulence Hrp PAI Protein 3e-82 46
hrcN YP_198730.1 type III secretion system ATPase Virulence Hrp PAI Protein 5e-83 46
lscN AAO18044.1 LscN Virulence TTSS locus Protein 3e-86 46
YPO0267 YP_002345348.1 type III secretion system ATPase Virulence Not named Protein 7e-76 46
hrcN ABA47275.1 HrcN Virulence S-PAI Protein 4e-77 46
hrpB6 AAB08461.1 HrpB6 Virulence Hrp PAI Protein 2e-82 45
hrcN AAP34339.1 HrcN Virulence Hrp PAI Protein 4e-83 45
hrcN YP_362163.1 type III secretion system ATPase Virulence Hrp PAI Protein 3e-82 45
XC_3006 YP_244074.1 type III secretion system ATPase Virulence Hrp PAI Protein 5e-81 45
hrcN NP_636610.1 type III secretion system ATPase Virulence Hrp PAI Protein 5e-81 45
hrcN ABQ88354.1 HrcN Virulence Hrp PAI Protein 1e-66 45
hrpJ4 AAA81942.1 HrpJ4 Virulence Hrp PAI Protein 1e-66 45
invC YP_217813.1 ATP synthase SpaL Virulence SPI-1 Protein 1e-60 43
spaI NP_457288.1 secretory apparatus ATP synthase (associated with virulence) Virulence SPI-1 Protein 1e-60 43
spaI NP_806497.1 ATP synthase SpaL Virulence SPI-1 Protein 1e-60 43
invC NP_461815.1 ATP synthase SpaL Virulence SPI-1 Protein 1e-60 43
hrcN AAB06001.1 HrcN Virulence Hrp PAI Protein 5e-74 42
ECs3730 NP_311757.1 ATP synthase SpaL Not tested LIM Protein 3e-61 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
DvMF_2290 YP_002436700.1 flagellar protein export ATPase FliI VFG2331 Protein 2e-87 49
DvMF_2290 YP_002436700.1 flagellar protein export ATPase FliI VFG2144 Protein 2e-90 49
DvMF_2290 YP_002436700.1 flagellar protein export ATPase FliI VFG0730 Protein 1e-77 49
DvMF_2290 YP_002436700.1 flagellar protein export ATPase FliI VFG0390 Protein 7e-86 48
DvMF_2290 YP_002436700.1 flagellar protein export ATPase FliI VFG0192 Protein 4e-86 48
DvMF_2290 YP_002436700.1 flagellar protein export ATPase FliI VFG2499 Protein 2e-90 48
DvMF_2290 YP_002436700.1 flagellar protein export ATPase FliI VFG0812 Protein 4e-77 48
DvMF_2290 YP_002436700.1 flagellar protein export ATPase FliI VFG0048 Protein 5e-83 47
DvMF_2290 YP_002436700.1 flagellar protein export ATPase FliI VFG1254 Protein 1e-88 47
DvMF_2290 YP_002436700.1 flagellar protein export ATPase FliI VFG0515 Protein 4e-73 47
DvMF_2290 YP_002436700.1 flagellar protein export ATPase FliI VFG1008 Protein 5e-59 44
DvMF_2290 YP_002436700.1 flagellar protein export ATPase FliI VFG0555 Protein 4e-61 43