Gene Information

Name : Dalk_0340 (Dalk_0340)
Accession : YP_002429517.1
Strain : Desulfatibacillum alkenivorans AK-01
Genome accession: NC_011768
Putative virulence/resistance : Virulence
Product : Fis family two component sigma-54 specific transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG2204
EC number : -
Position : 451428 - 452804 bp
Length : 1377 bp
Strand : +
Note : PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: dol:Dole_0427 two component, sigma54 specific, Fis fami

DNA sequence : 
ATGAACTTGGAAAATAACGCCGACATTCTGGTGGTGGACGACGATGAGGGCCACCGTAAAACCCTTTATACGGTTATCAA
AAGTTGGGGCTATAACGTAAAAACCGCAGAGGACGGGTCCATTGCCGTGGATATGGTGAGGGAAGGTCCCTATGACGTCA
TTCTTATGGATGTGCGCATGGCGGAAATGGACGGCATTCAGGCCCTCAAGCTCATCAAGGAGTACAATCCCTCCATTCCC
GTGCTGATCATGACCGCCTACTCCTCGGTGGAGTCCGCCATCGAAGCCATGAAAACCGGCGCCTATGACTATCTGACCAA
GCCCCTGGATTTTGAGGACCTGCGTTTGACCATTGAGAGAGCTAGGGAATACGCAGGCCTGAGGGAGGAAAATAAGGAGC
TGAAGCAGGCCCTGGGCTTTCGCGCCGGACTGCGGGATATTATTGGAAAAAGCTCAGTCATGAAAGAGCTTACCGACATG
GTGAGCATGATCGCCCCTACCGAAGCCACGGTCCTCATCACCGGAGAAAGCGGCACAGGCAAGGAACTGGTGGCCCGTTC
CATCCACGAAGGAAGTCAGCGCAAGGACGGCCCCCTGGTCGTGCTCAACTGTGCTGCCCTTACTGAAACCCTGTTGGAGT
CGGAGCTCTTCGGCCACGAAAAAGGGGCCTTTACCGGAGCTGACAAGAAAAGAGACGGCAGGTTCGTCCAGGCGGACCAA
GGGACCTTGTTTTTGGACGAAATCGGCGAAATGCCCCTGACCATGCAAGCCAAACTTTTACGCGCCATCCAGGAAAAAGA
GGTCCAGAGGGTGGGCAGCGACGCGACGGTCACGGTGGACGTCCGCATTATCGCCGCCACCAACCGGGACCTGGAGCAGG
AGGTGGCGGAAGGCAAGTTCCGGGAAGATTTGTTTTATCGCCTGAACGTGGTGACGCTCCGCATCCCCCCCCTGCGGGAG
AGGGACGGGGACATTCATCTGCTGGCTCAGTATTTTCTGGAAAAATTTGCGGAAAGAAACCGGAAGCACGTCAAAGGCAT
AACCCCCCAGGCCATGGACATGCTGTTGAAGCATCCCTGGCCGGGAAACGTGCGGGAACTGGAAAACGCCATGGAAAGGG
CGGTTATTCTCCTGACCGGAGACTTCATTACGGAAAAGGAGCTGCCCTTAAGCATTTGCGGACCCGTATGCGACGACGAG
CCCATGGAGCAGATAGAGCAGGAGCCCATTCTCCAGTCTTTGGAGGAAGTGGAGAAAAAAGCGATTCTGGCGACCCTCAA
GGCCGTGGACGGCAACAAAAGCGAGGCGGCCCGTAGGCTGGGCATCACCCGAAAAACCCTGCACAGCAAACTGGCCAAAT
ACGATTACACGGATTAA

Protein sequence : 
MNLENNADILVVDDDEGHRKTLYTVIKSWGYNVKTAEDGSIAVDMVREGPYDVILMDVRMAEMDGIQALKLIKEYNPSIP
VLIMTAYSSVESAIEAMKTGAYDYLTKPLDFEDLRLTIERAREYAGLREENKELKQALGFRAGLRDIIGKSSVMKELTDM
VSMIAPTEATVLITGESGTGKELVARSIHEGSQRKDGPLVVLNCAALTETLLESELFGHEKGAFTGADKKRDGRFVQADQ
GTLFLDEIGEMPLTMQAKLLRAIQEKEVQRVGSDATVTVDVRIIAATNRDLEQEVAEGKFREDLFYRLNVVTLRIPPLRE
RDGDIHLLAQYFLEKFAERNRKHVKGITPQAMDMLLKHPWPGNVRELENAMERAVILLTGDFITEKELPLSICGPVCDDE
PMEQIEQEPILQSLEEVEKKAILATLKAVDGNKSEAARRLGITRKTLHSKLAKYDYTD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrpS AAT96215.1 HrpS Virulence T-PAI Protein 3e-43 41
hrpS AAT96161.1 HrpS Virulence T-PAI Protein 3e-43 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Dalk_0340 YP_002429517.1 Fis family two component sigma-54 specific transcriptional regulator BAC0467 Protein 2e-125 60
Dalk_0340 YP_002429517.1 Fis family two component sigma-54 specific transcriptional regulator BAC0089 Protein 2e-90 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Dalk_0340 YP_002429517.1 Fis family two component sigma-54 specific transcriptional regulator VFG0116 Protein 3e-66 41
Dalk_0340 YP_002429517.1 Fis family two component sigma-54 specific transcriptional regulator VFG1214 Protein 7e-73 41