Gene Information

Name : Dalk_1007 (Dalk_1007)
Accession : YP_002430178.1
Strain : Desulfatibacillum alkenivorans AK-01
Genome accession: NC_011768
Putative virulence/resistance : Virulence
Product : flagellar biosynthetic protein FliP
Function : -
COG functional category : N : Cell motility
COG ID : COG1338
EC number : -
Position : 1335463 - 1336233 bp
Length : 771 bp
Strand : -
Note : KEGG: gsu:GSU0423 flagellar biosynthesis protein FliP; TIGRFAM: flagellar biosynthetic protein FliP; PFAM: type III secretion system inner membrane P protein

DNA sequence :
ATGAAAGCCGGAAATAAAAAATGGATGCTCATGTTACCGGCCCTTGCTTGTTTGGTTGTTCTGCCCGAAATAGCCGAGGC
GGCGACTATCGCCGTGCCCTCCGTGCAAATAGGCGTGGAAGAGGCGACAGGCCCGGAACAGGTTTCCGTGCTGCTGCAGA
TTGTGGCGCTGCTGACCGTTTTGACCCTGGCGCCCGCCATTCTCATGCTCATGACTTCGTTCACCCGGCTGGCCGTGGTT
TTTTCCTTTCTGCGCCACGCCCTGGGCACCCAGCAAATGCCGCCCAACCAGGTAATGGTGGGCTTGGCCCTGTTTTTGAC
CGTATTCATTATGATGCCGGTCTGGAAGGACATCAACACAAACGCCCTTCAACCCTATTTGAACGAGGAGATCGGCGACC
AGGAAGCCATCGAAAAAGCCGTCACCCCCTTGCGGGAGTTCATGTTCAGGCACACACGGGAAAAGGATTTGGCGCTTTTC
GTCAAGATTTCCGGAGAGGCCAAGCCCAACAGCCCCAAAGACGTTACCATTTGGACCCTCATCCCGGCCTTTGTGATCAG
CGAACTGACCACGGCCTTTATGATCGGCTTTATTATTTACGTCCCGTTTTTAATTATCGACATGGTGGTCGCCAGCGTCC
TGCTGTCCATGGGTATGATGATGTTGCCGCCTGTCATGATTTCCCTGCCCTTCAAGCTCATGCTCTTCGTCCTGGTGGAC
GGGTGGAGCCTGATTGTGGGGTCTTTGGTCCAGAGTTTTGCAGGAGGGTAG

Protein sequence :
MKAGNKKWMLMLPALACLVVLPEIAEAATIAVPSVQIGVEEATGPEQVSVLLQIVALLTVLTLAPAILMLMTSFTRLAVV
FSFLRHALGTQQMPPNQVMVGLALFLTVFIMMPVWKDINTNALQPYLNEEIGDQEAIEKAVTPLREFMFRHTREKDLALF
VKISGEAKPNSPKDVTIWTLIPAFVISELTTAFMIGFIIYVPFLIIDMVVASVLLSMGMMMLPPVMISLPFKLMLFVLVD
GWSLIVGSLVQSFAGG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 1e-35 46
yscR NP_456109.1 putative type III secretion protein Virulence SPI-2 Protein 5e-32 44
yscR NP_805090.1 type III secretion system protein Virulence SPI-2 Protein 5e-32 44
ssaR YP_216427.1 type III secretion system protein Virulence SPI-2 Protein 1e-32 44
ssaR NP_460384.1 type III secretion system protein Virulence SPI-2 Protein 1e-32 44
ssaR CAA68199.1 secretion system apparatus, SsaR Virulence SPI-2 Protein 1e-32 44
lscR AAO18040.1 LscR Virulence TTSS locus Protein 3e-34 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Dalk_1007 YP_002430178.1 flagellar biosynthetic protein FliP VFG1259 Protein 2e-58 63
Dalk_1007 YP_002430178.1 flagellar biosynthetic protein FliP VFG2338 Protein 2e-51 58
Dalk_1007 YP_002430178.1 flagellar biosynthetic protein FliP VFG2016 Protein 2e-49 57
Dalk_1007 YP_002430178.1 flagellar biosynthetic protein FliP VFG2494 Protein 5e-52 57
Dalk_1007 YP_002430178.1 flagellar biosynthetic protein FliP VFG0394 Protein 1e-35 45
Dalk_1007 YP_002430178.1 flagellar biosynthetic protein FliP VFG0519 Protein 6e-33 44
Dalk_1007 YP_002430178.1 flagellar biosynthetic protein FliP VFG0044 Protein 6e-35 41
Dalk_1007 YP_002430178.1 flagellar biosynthetic protein FliP VFG0188 Protein 7e-35 41