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Name : lysS (AFE_0480) Accession : YP_002424976.1 Strain : Acidithiobacillus ferrooxidans ATCC 23270 Genome accession: NC_011761 Putative virulence/resistance : Virulence Product : lysyl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : 6.1.1.6 Position : 420457 - 421947 bp Length : 1491 bp Strand : + Note : identified by similarity to SP:P14825; match to protein family HMM PF00152; match to protein family HMM PF01336; match to protein family HMM TIGR00499 DNA sequence : ATGGTGGATCAGGAACTCAATGACCAGATGCAGGTGCGGCGCGACAAGCTGGGACAGTGGCGCAGCGAAGGCCATGCCTA TCCCAACGGCTTCCGCCGCGATGCCCTGGCGGGCGACCTGCAAGAGCGTTATGGCGATATGGACGCCACGGCGCTGGAGC AGGAGCCCATCGAGGCACGGCTCGGCGGGCGGCTGATGAGCCGCCGGGTCATGGGCAAGGCCAGTTTCGCCGACATTCAG GATCAGTCCGGGCGTATTCAACTCTTTGTCAGCCGCGATAATCTGGGCGAAGAGGTCTACGCGCGCTTCAAGGGCCTGGA TTTGGGCGACATCATCGGTGTGGATGGTATCCTGTTCCGCACCAAGACCGGTGAATTGTCCCTGAAGGTGCATAGCCTCC AACTGCTGAGCAAGGCCCTGCGTCCGCTGCCGGAAAAATGGCACGGGCTCGCCGACCCGGAAACCCGCTTCCGCCAGCGC TATGTCGATCTGATCGTCACCGAGGCCACCCGCCGCACCTTCCAGATTCGTGCGGAAACGGTGGCGGCCCTGCGCGATGG TCTGCGCCAGCGCGGCTTTTATGAAGCGGAGACGCCCATGATGCAGCCCGTCCCCGGTGGTGCCACGGCGCGGCCCTTTG TCACCCACCACCATGCCCTCGACATGACCCTTTACCTGCGTATCGCCCCGGAGCTGTACCTCAAGCGGTTGGTGGTGGGC GGCATTGAGCAGGTCTTCGAGATCAACCGCAACTTCCGCAATGAAGGTATTTCCACCCGCCACAATCCCGAGTTCACCAT GCTCGAATGGTACGAGGCCTACGCCGACCACGTGCGCGCCATGGACCTCACCGAGACCCTGATCCGCGCCGCGGCACAGG CGGCCCTGGGCACCACGGCGATAAGCTATCAAGGGCTGGAGATCGACCTCGGCAAACCCTTCCACCGCCTGACGGTGACG GAATCGGTGCGTGCCCATAACCCCGATCTGGCGGATGCCGATCTGCGGGACCCCGCAGTGCTGGCCGCCAAGCTCGCGCA GTTGCACCTGCCCTGTCAGCCCGCCTGGGGCTGGGGCAAACGTCTCATCGAAATCTTCGAGAAGACGGTGGAAGGCCATC TCCAGCAGCCCACCTTCATCACCGAGTATCCCCTGGAGGTCAGCCCGCTGGCGCGCCGCAATGATCTCGACCCCGAGGTC ACGGATCGTTTCGAGCTGATGATCGCCGGCCGCGAGTTGGCCAACGGCTTCTCCGAGTTGAATGATCCCGAAGACCAGTC CGCCCGCTTCCGGGCGCAGGTCGAGGCTAAGGATGCCGGGGACGAGGAGGCGATGTTCTTCGACGCCGACTATATCCGTG CCCTGGAATATGGCATGCCGCCGACCGCAGGGGTGGGGCTGGGCATTGACCGTCTGGTCATGCTGCTTGCTGACCAGCCC AGCATTCGCGAGGTGATTCTCTTCCCCCATCTGCGGCCGGAACAGTCATGA Protein sequence : MVDQELNDQMQVRRDKLGQWRSEGHAYPNGFRRDALAGDLQERYGDMDATALEQEPIEARLGGRLMSRRVMGKASFADIQ DQSGRIQLFVSRDNLGEEVYARFKGLDLGDIIGVDGILFRTKTGELSLKVHSLQLLSKALRPLPEKWHGLADPETRFRQR YVDLIVTEATRRTFQIRAETVAALRDGLRQRGFYEAETPMMQPVPGGATARPFVTHHHALDMTLYLRIAPELYLKRLVVG GIEQVFEINRNFRNEGISTRHNPEFTMLEWYEAYADHVRAMDLTETLIRAAAQAALGTTAISYQGLEIDLGKPFHRLTVT ESVRAHNPDLADADLRDPAVLAAKLAQLHLPCQPAWGWGKRLIEIFEKTVEGHLQQPTFITEYPLEVSPLARRNDLDPEV TDRFELMIAGRELANGFSELNDPEDQSARFRAQVEAKDAGDEEAMFFDADYIRALEYGMPPTAGVGLGIDRLVMLLADQP SIREVILFPHLRPEQS |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66193.1 | putative lysil-tRNA synthetase LysU | Not tested | PAI III 536 | Protein | 4e-119 | 55 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lysS | YP_002424976.1 | lysyl-tRNA synthetase | VFG1668 | Protein | 2e-119 | 55 |
