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Name : AFE_0447 (AFE_0447) Accession : YP_002424943.1 Strain : Acidithiobacillus ferrooxidans ATCC 23270 Genome accession: NC_011761 Putative virulence/resistance : Virulence Product : sigma-54 dependent DNA-binding response regulator Function : - COG functional category : T : Signal transduction mechanisms COG ID : COG2204 EC number : - Position : 387060 - 388445 bp Length : 1386 bp Strand : - Note : identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF07728 DNA sequence : ATGCCCAGACCAGCTCCCATCATCCTGACCATCGACGATGATCCCGACTTTCTGCGCCTGCTCGGCCTCTGGCTGGAAAG TGAGGGATACCACGTCCTGGCCAGCAGTGATCCCGTGCAGGGCATGCAGACGTTGCAGACGGCCAGACCGGATCTGGTCA TCACCGATCTGCGCATGCCCGGCATGGATGGAATGGCCGTGCTGGAGACGGTGCAGGCCCTCGATCCCGACCTCCCCGTT ATCCTCCTCACCGCCCACGGCAGCATCCCCAACGCCGTGGCAGCCATGCGTGCCCAGGCTTTCGGATATCTGAGCAAACC CTTCAGCAATGAAGAGCTCCAGGAGTTGACCACCGCCGCCCTGGCGCAGCGCCACGCCGGGCAGGAAACCCGCAAGCTCC GGGCGGCGTTGCGGCAACAGGCCGGGCAGAGCATCCTCCATCGTAGCCCCGCCATGGCGGCGCTGGTGGATGAGCTGGCG TGCGTTGCCAACTCGAAAGCCAGCGTTTTCCTTTCCGGAGAAAGCGGATCCGGCAAAGAACGGGTCGCTCGTGCCATCCA CGACGCCAGCCCACGCCGTGACGGCCCGTTCGTTGCGGTCAATTGCGGTGCCATCCCCGCCGGGCTGGCGGAGAGCGAAC TCTTCGGCCATGTCAAGGGCGCCTTCACCGGCGCCACCCAGGATCACACCGGATTGATCCGCAGCGCCAGCGGCGGCACT CTGTTCCTCGACGAAATCGCCGACCTGCCTCTCACTCTGCAGGTCAAATTGCTCCGCGTCCTTCAGGAAGGTTCCTTGCG CCCCGTCGGCGCCAAAACGGAAATTTCCGTCGACCTGCGGGTCATCAGTGCCACCCATCAGGACATTCACGCCCTCACCG CCGACGGCACCTTCCGCGAGGATCTTTACTATCGCCTGCATGTCATCCCGCTGCGGGTCCCCAGCCTGAGCGAAAGGGCG GAAGACATCCCGCTGCTGGCCCAGCACTTTCTGGACCGCGAGAGTCAGCGCATGAACCGGGATATCCTGGGTTTCAGTCC CGAGGCCCTCGACAAGCTGATGCAACGATCCTGGCCCGGCAACGTCCGGGAATTGGAGAATGCCGTCACCTTTGCCGCGG CCGTCACCGAAAAAGGCTGGGTCGCCGCCGACGCCATCCCTGACAACGGCCGCCAGGGTGGCCAGAGCGCCTTTCCTCCC CTGCAGGACGCCAAGGCGGCCTTTGAGCGCGGCTACCTGGAAAACCTGCTACGCGCGACGGATGGCAACATCTCCCGTGC CGCACGCATTGCCGGCCGACACCGGACGGATCTTTACAAGCTGATGCGTAAGCACAGTCTGGCTCCGCAACTTTTCAAGA ATCCCGAGGACCGGGATGAGGAATAG Protein sequence : MPRPAPIILTIDDDPDFLRLLGLWLESEGYHVLASSDPVQGMQTLQTARPDLVITDLRMPGMDGMAVLETVQALDPDLPV ILLTAHGSIPNAVAAMRAQAFGYLSKPFSNEELQELTTAALAQRHAGQETRKLRAALRQQAGQSILHRSPAMAALVDELA CVANSKASVFLSGESGSGKERVARAIHDASPRRDGPFVAVNCGAIPAGLAESELFGHVKGAFTGATQDHTGLIRSASGGT LFLDEIADLPLTLQVKLLRVLQEGSLRPVGAKTEISVDLRVISATHQDIHALTADGTFREDLYYRLHVIPLRVPSLSERA EDIPLLAQHFLDRESQRMNRDILGFSPEALDKLMQRSWPGNVRELENAVTFAAAVTEKGWVAADAIPDNGRQGGQSAFPP LQDAKAAFERGYLENLLRATDGNISRAARIAGRHRTDLYKLMRKHSLAPQLFKNPEDRDEE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00300 | YP_008207765.1 | Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains | Not tested | AbaR25 | Protein | 7e-64 | 41 |
| BJAB0868_00304 | YP_008211630.1 | Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains | Not tested | AbaR26 | Protein | 7e-64 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| AFE_0447 | YP_002424943.1 | sigma-54 dependent DNA-binding response regulator | BAC0467 | Protein | 4e-72 | 47 |
| AFE_0447 | YP_002424943.1 | sigma-54 dependent DNA-binding response regulator | BAC0089 | Protein | 3e-90 | 44 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| AFE_0447 | YP_002424943.1 | sigma-54 dependent DNA-binding response regulator | VFG1249 | Protein | 6e-61 | 44 |
| AFE_0447 | YP_002424943.1 | sigma-54 dependent DNA-binding response regulator | VFG1214 | Protein | 2e-71 | 42 |
