|
Name : AFE_3161 (AFE_3161) Accession : YP_002427523.1 Strain : Acidithiobacillus ferrooxidans ATCC 23270 Genome accession: NC_011761 Putative virulence/resistance : Resistance Product : D-isomer specific 2-hydroxyacid dehydrogenase family protein Function : - COG functional category : C : Energy production and conversion COG ID : COG1052 EC number : - Position : 2842362 - 2843357 bp Length : 996 bp Strand : - Note : identified by match to protein family HMM PF00389; match to protein family HMM PF02826 DNA sequence : ATGCGTTGTCTGGTGACCAGTGCTCGCCCTTACGATGAACAATTCCTCAGCGCCGCCAACCATGGACGCCACGAATTGGT ATTTGTTGAAACCGCACTGAGCGCGGATACGGCTTTTATTGCCCAGGGATACCCTGCCATTTGCCCCTTCGTGGATGACA CGCTGGACGCAAAAACACTGGAAACCATAGCGCGCTTGGGGACTAAACTACTGGTCTTGCGCAGCACCGGGTTCAATCAT GTGGACATGCCTGCGGCCGAGAAGTACGGCATCACCGTCATGCGGGTACGCGATTATTCCCCTTATGCGGTGGCTGAATA TGCCGTCGGCCTGATGTTGACCCTGAACCGACACCTGCATAAAGCCTATAACCGGGTGCGTGACGGTAATTTTCTCCTCG ACGGCTTGCTGGGTTTTGACATGCATGGCAAAACCGTAGGCATTATCGGCACTGGAAAAATTGGCCAGGCACTCGCCCGG ATTCTGCATGGTATGGGCTGCCACTTGTTGGGCTACGACACAGTCGCCAATCCCGCGTGCCTGGAACTCGGCGTTGCATA TGTACCGCTGGAAGAATTGCTCGTCAAAAGCCAAATCGTCAGCCTCCATGTGCCGCTGCTCCCGGAAACCCGGCATCTGA TGAATGCGGAACGGTTCGCCTTGATGCCGGACGGTGCCATGCTGATCAATACCAGCCGTGGTCCGCTCATCGACACCACG GCACTCATTGCGGCACTGAAAAGCCGCCATCTGGGTGCTGTGGGTCTGGATGTCTATGAAGAAGAGGCAGAATTATATTT TAAGGATCATTGCGATGACATTATCTGCGATGACAGCTTCGAACGGCTGCTCACTTTTCCCAATGTCATCATCACGGGCC ATCAGGCCTTTTTTACCAGTGAGGCACTGACCACCATTGCCAGGACCACGATCCAGAACCTGGATGACTACAGCGATGGA AAGGATAATCCCAATTGCGTTCGCAGCAAGGGATGA Protein sequence : MRCLVTSARPYDEQFLSAANHGRHELVFVETALSADTAFIAQGYPAICPFVDDTLDAKTLETIARLGTKLLVLRSTGFNH VDMPAAEKYGITVMRVRDYSPYAVAEYAVGLMLTLNRHLHKAYNRVRDGNFLLDGLLGFDMHGKTVGIIGTGKIGQALAR ILHGMGCHLLGYDTVANPACLELGVAYVPLEELLVKSQIVSLHVPLLPETRHLMNAERFALMPDGAMLINTSRGPLIDTT ALIAALKSRHLGAVGLDVYEEEAELYFKDHCDDIICDDSFERLLTFPNVIITGHQAFFTSEALTTIARTTIQNLDDYSDG KDNPNCVRSKG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| EF2295 | NP_815952.1 | D-specific alpha-keto acid dehydrogenase | Not tested | Not named | Protein | 3e-33 | 42 |
| vanHB | YP_008394258.1 | VanH protein, D-specific alpha-keto acid dehydrogenase | Not tested | Not named | Protein | 8e-34 | 42 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| AFE_3161 | YP_002427523.1 | D-isomer specific 2-hydroxyacid dehydrogenase family protein | U35369.1.gene5.p01 | Protein | 2e-33 | 42 |
| AFE_3161 | YP_002427523.1 | D-isomer specific 2-hydroxyacid dehydrogenase family protein | AF310956.2.orf4.gene | Protein | 4e-34 | 42 |
| AFE_3161 | YP_002427523.1 | D-isomer specific 2-hydroxyacid dehydrogenase family protein | NC_005054.2598279.p0 | Protein | 2e-30 | 42 |
| AFE_3161 | YP_002427523.1 | D-isomer specific 2-hydroxyacid dehydrogenase family protein | NC_014475.1.orf2.gen | Protein | 2e-30 | 42 |
