Gene Information

Name : ctrD (AFE_2963)
Accession : YP_002427330.1
Strain : Acidithiobacillus ferrooxidans ATCC 23270
Genome accession: NC_011761
Putative virulence/resistance : Virulence
Product : capsule polysaccharide exporter, ATP-binding protein
Function : -
COG functional category : G : Carbohydrate transport and metabolism
COG ID : COG1134
EC number : 3.6.3.38
Position : 2648246 - 2648899 bp
Length : 654 bp
Strand : +
Note : identified by similarity to SP:P32016; match to protein family HMM PF00005

DNA sequence : 
ATGATTGAGCTTTGTGAAGTGACCAAGACCTACCCTATCTATCATGGCCATGCGCAACGGACCATTTTGGATAGGATAAA
TTTGCGTGTAGGGAAGGGCCAAAAATGGGGCATCCTCGGGCGGAACGGGGCGGGTAAATCGACGCTTATCCGACTCATCA
GTGGTGCAGAAAGGCCTAATACCGGCAATATCGTCAGAAACATGACCGTATCCTGGCCCTTGGCTTTTGGTGGAGCTTTT
CAGGGCAGCCTCACGGGGCGGGACAATACCCGCCTCATTTGCCGAGCTTACGGGGTGGATTTTGATAAAACCATAACTAT
GGTGGAAAACTTCGCAGAGCTTGGTAGTTATCTGTGGGAACCGGTTAAATCTTATTCATCTGGCATGTCGGCACGACTAG
CCTTTGCTATCTCCATATCTGTGGAGTTTGATTGTTTTCTCATCGATGAGGCGCTGGCCGTTGGTGATCACCGGTTCCTC
CAGAAATGTAATGTAGAATTATTTGAAAATCGTGGCGATCGCGCCATGATCATCGTCTCCCATCAGACAAATATTATCCG
GACCCACTGTGATCATGCCGCCGTATTGGAAAATGGCCATCTGACGGTACATGAAAGCGTGGATTCTGCCATTGCTGCGT
ACGAGGCGCTCTGA

Protein sequence : 
MIELCEVTKTYPIYHGHAQRTILDRINLRVGKGQKWGILGRNGAGKSTLIRLISGAERPNTGNIVRNMTVSWPLAFGGAF
QGSLTGRDNTRLICRAYGVDFDKTITMVENFAELGSYLWEPVKSYSSGMSARLAFAISISVEFDCFLIDEALAVGDHRFL
QKCNVELFENRGDRAMIIVSHQTNIIRTHCDHAAVLENGHLTVHESVDSAIAAYEAL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ctrD NP_273138.1 capsule polysaccharide export ATP-binding protein CtrD Not tested IHT-A Protein 2e-58 62
kpsT YP_854396.1 polysialic acid transport ATP-binding protein KpsT Not tested PAI I APEC-O1 Protein 7e-39 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ctrD YP_002427330.1 capsule polysaccharide exporter, ATP-binding protein VFG0258 Protein 7e-59 62
ctrD YP_002427330.1 capsule polysaccharide exporter, ATP-binding protein VFG0696 Protein 2e-56 60
ctrD YP_002427330.1 capsule polysaccharide exporter, ATP-binding protein VFG2563 Protein 6e-59 58
ctrD YP_002427330.1 capsule polysaccharide exporter, ATP-binding protein VFG1449 Protein 2e-39 41