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Name : AFE_2955 (AFE_2955) Accession : YP_002427322.1 Strain : Acidithiobacillus ferrooxidans ATCC 23270 Genome accession: NC_011761 Putative virulence/resistance : Virulence Product : sigma-54 dependent DNA-binding response regulator Function : - COG functional category : T : Signal transduction mechanisms COG ID : COG2204 EC number : - Position : 2639809 - 2641182 bp Length : 1374 bp Strand : - Note : identified by match to protein family HMM PF00072; match to protein family HMM PF00158 DNA sequence : ATGGAAAAAGGCAGAATCTTACTCGTGGATGATGACGCCGATCTCCTGCGTCTGTTGTCCCTGCGCATGAAGGCGGCCGG CTATGTGGTCAGCACCGCGGCCAGCGGCAGCGAAGCGTTGTCGGTACTGGCGATGGAGCACCCGTCCCTGGTCATCACCG ATCTCAAGATGGATGAGATGGACGGTATGGCGCTGCTGGACGCCATTCGCCGCGACTACCCGACGTTGCCCGTCATCATC CTTACCGCCCACGGTTCCATCCCCGATGCCCTGCTGGCCGCTGACCAGGGTGTCTTTGCCTTCCTCACCAAGCCTTTTGA TGGCAAGGATCTGATGGCGCAGGTGGAGCGTGCCTTCAACCTGACGGCGGCGGTTCCCCCTTCTTCGGGCAAGAAGGGCC GGGACTCCAGTTGGGACCGGATCCTGACCCGCAGCCCCAAAATGCAGACGGTGCTGGATCAGGCGCGTCTGGTGGCGGCA TCCGATGCCAGCGTCTTCATTCATGGCGCCAGTGGTACCGGTAAGGAACTGCTGGCCCAGGCCATCCATCAGGCGAGTCC GCGCCATGGCCACGCCTTTATTGCCGTCAACTGCGCGGCCTTTCCCGAGCAACTGCTGGAGTCGGAACTCTTCGGGCACA AAAAGGGCGCCTTCACCGGAGCGGCCAGCAGTCATCAGGGCCTGTTCCAGGCGGCGGAGGGCGGCACGCTTTTTCTGGAC GAAATTGGCGATATGCCTCTCCCGTTACAGGTCAAACTGCTGCGCGCCCTGCAGGAACGGATGATTCGTCCGGTCGGCGC CACCGAGAGCATCGCCGTCGACGTGCGGATCATCTCCGCCAGTCACCGGGATTTGGAGCAGGAGATGGCTGCCCGGCGTT TCCGGGATGATCTCTACTATCGCCTTTGCGTGGTGACCCTGGAACTTCCCGCCCTGGCGGAGCGCCCGGAGGATATCCCG CTGCTGGCCGAGTTTTTCCTGCGAGATGCGGCGGCCAAGAATCGCAAGGACGTTCGCGGGATCGCGCCGGAAGCCATGGA ACTGCTCGTATCGGCGCCCTGGCCGGGCAATGTCCGGCAGCTCGCCAACGTCATCGAACAGGCGGTGGTGCTGTCCACTA CCCCGCGAATCGGGGCGCCCCTCATCCGTCATGCCTTGCGTGACCGGGAAGGGGAGGTCATGCCTCTGGCCGATGCCAAG GGCCGTTTCGAGATGAATTATCTGATCCAGATCATGCGCATGACCCGCGGCAACGTGAGTCAGGCCGCACAACTCGCACA GCGCAACCGCACCGAGTTTTATCGCCTCCTGCACCGCTACCACCTCGATCCCGCCGCCTTCAAGGAAGCCGGTGGTGAAG CGGAGGAGGAGTAG Protein sequence : MEKGRILLVDDDADLLRLLSLRMKAAGYVVSTAASGSEALSVLAMEHPSLVITDLKMDEMDGMALLDAIRRDYPTLPVII LTAHGSIPDALLAADQGVFAFLTKPFDGKDLMAQVERAFNLTAAVPPSSGKKGRDSSWDRILTRSPKMQTVLDQARLVAA SDASVFIHGASGTGKELLAQAIHQASPRHGHAFIAVNCAAFPEQLLESELFGHKKGAFTGAASSHQGLFQAAEGGTLFLD EIGDMPLPLQVKLLRALQERMIRPVGATESIAVDVRIISASHRDLEQEMAARRFRDDLYYRLCVVTLELPALAERPEDIP LLAEFFLRDAAAKNRKDVRGIAPEAMELLVSAPWPGNVRQLANVIEQAVVLSTTPRIGAPLIRHALRDREGEVMPLADAK GRFEMNYLIQIMRMTRGNVSQAAQLAQRNRTEFYRLLHRYHLDPAAFKEAGGEAEEE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00300 | YP_008207765.1 | Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains | Not tested | AbaR25 | Protein | 1e-58 | 41 |
| BJAB0868_00304 | YP_008211630.1 | Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains | Not tested | AbaR26 | Protein | 1e-58 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| AFE_2955 | YP_002427322.1 | sigma-54 dependent DNA-binding response regulator | BAC0467 | Protein | 3e-78 | 50 |
| AFE_2955 | YP_002427322.1 | sigma-54 dependent DNA-binding response regulator | BAC0089 | Protein | 6e-82 | 42 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| AFE_2955 | YP_002427322.1 | sigma-54 dependent DNA-binding response regulator | VFG1249 | Protein | 1e-68 | 48 |
| AFE_2955 | YP_002427322.1 | sigma-54 dependent DNA-binding response regulator | VFG1214 | Protein | 7e-66 | 45 |
| AFE_2955 | YP_002427322.1 | sigma-54 dependent DNA-binding response regulator | VFG0116 | Protein | 9e-56 | 42 |
