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Name : AFE_2793 (AFE_2793) Accession : YP_002427163.1 Strain : Acidithiobacillus ferrooxidans ATCC 23270 Genome accession: NC_011761 Putative virulence/resistance : Unknown Product : type I restriction-modification system, M subunit Function : - COG functional category : V : Defense mechanisms COG ID : COG0286 EC number : 2.1.1.72 Position : 2485818 - 2487395 bp Length : 1578 bp Strand : - Note : identified by match to protein family HMM PF02384 DNA sequence : ATGCCGCGCGGACCAACCAAAAAGAAGACCGAAGACACCACCAGCCAGAGCCTGGAATCGAAGCTCTGGGCCACCGCCGA CAAGCTGCGTGGGCATCTGGACGCCGCCGACTACAAGCATGTGGTGCTGGGCCTCATCTTCCTGAAATACATCTCGGACC GCTTTGCCCAACGCCATGAAGAAATCATTCGGGAAGAAGCAGGGACTTACGCAGCCGAAGACCGAGATGAATACACGGCG GAAGGCGTGTTCTGGGTACCGGCATCGTCCAGATGGGCAGTGGTGCAAACTGCCGCCAAACAGCCGGACATCGGCAAGCG CATCGACGGTGCCATGACCGATATCGAGCGGGAAAACCCGCATCTGAAAAACATCCTGCCCAAAGGCTATGCCCGCCCCA CCCTGGATCAGCGCCGCCTGGGCGAACTGGTGGACCTCATCGGTACCATTGGCCTTGGCACCGCCGAACATCAGGCCCGC GACACCCTGGGCCGGGTCTACGAGTATTTTCTGGGTCGATTTGCCAGCGCGGAAGGGAAACGGGGTGGCGAGTTCTACAC CCCGGCATCGGTGGTCAGAACCCTGGTCACCATGCTGGCCCCCTACAAAGGGCGCATCTATGACCCCTGTTGCGGGTCCG GCGGCATGTTCGTTCAGTCGGAAAAGTTCATCGAGGCCCACGGTGGCAAAGTCGGCGACATCAGCGTCTATGGGGAAGAA TCCAACCCCAACACCTGGAAGCTGGCCCTCATGAATCTCGCCATTCGCGGCATCGAGGCCGACCTGGGACCGGAAGCGGC GGACACCTTTCACAAAGACCTGCATCCCGACCTGCGTGCCGATTACATCCTTGCCAACCCGCCCTTCAACATTTCCGATT GGGGCGGTGACCTGTTGCGGGATGACAAACGCTGGCAGTATGGGATACCGCCCACCGGCAACGCCAACTTCGCCTGGGTG CAGCACATGGTCCATCACCTGGCACCCTACGGCATCGCGGGCTTCGTGCTGGCGAATGGTTCCATGTCATCCAATACCAG CGGTGAAGGCGAAATCCGCAAGAACCTCATTGAAGCGGATCTGGTGGACTGCATGGTGGCCATGCCGGGCCAGCTATTCT ATAGCACCCAGATTCCCGTGTGCCTGTGGTTCCTGGCGAAGAACCGCGATGACGGACGCGGCATGACCGGCAAGGAACTG TTTGAGCGCACCGGCGAAGTGCTGTTCATCGATGCCCGCAACATGGGCTTCATGGCCGACCGCACCCACCGGGAACTGAC CGATGAAGACATCCAAAAGATCGCCGACACCTACCACAACTGGCGCGGCGATGGGGACGGGGAATATGCGGATATTCCCG GTTTCTGTAAGGCGGCCAGTCTGGATGACATCCGCAAGAACGGCCATGTGCTGACACCAGGGCGTTATGTTGGGGCTGCC GCCAAGGATGATGACGGCGAGCCTTTCGAGGAAAAGATGGACCGACTGACCAAGGAACTGTCCGCGCAGTTGGCGGAAGG ACGGCGGTTGGAAGACGAGATGCTGAAGAATTTTCGGGTGTTGGGGTATGAACTGTAA Protein sequence : MPRGPTKKKTEDTTSQSLESKLWATADKLRGHLDAADYKHVVLGLIFLKYISDRFAQRHEEIIREEAGTYAAEDRDEYTA EGVFWVPASSRWAVVQTAAKQPDIGKRIDGAMTDIERENPHLKNILPKGYARPTLDQRRLGELVDLIGTIGLGTAEHQAR DTLGRVYEYFLGRFASAEGKRGGEFYTPASVVRTLVTMLAPYKGRIYDPCCGSGGMFVQSEKFIEAHGGKVGDISVYGEE SNPNTWKLALMNLAIRGIEADLGPEAADTFHKDLHPDLRADYILANPPFNISDWGGDLLRDDKRWQYGIPPTGNANFAWV QHMVHHLAPYGIAGFVLANGSMSSNTSGEGEIRKNLIEADLVDCMVAMPGQLFYSTQIPVCLWFLAKNRDDGRGMTGKEL FERTGEVLFIDARNMGFMADRTHRELTDEDIQKIADTYHNWRGDGDGEYADIPGFCKAASLDDIRKNGHVLTPGRYVGAA AKDDDGEPFEEKMDRLTKELSAQLAEGRRLEDEMLKNFRVLGYEL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hsdM | YP_251979.1 | type I restriction-modification system DNA methylase | Not tested | SCCmec | Protein | 1e-161 | 61 |
| hsdM | BAD24842.1 | HsdM protein | Not tested | Type-V SCCmec | Protein | 4e-162 | 61 |
| hsdM | BAH57701.1 | type I restriction-modification system DNA methylase | Not tested | Type-VII SCCmec | Protein | 1e-162 | 61 |
| api49 | CAF28523.1 | putative HsdM-like N-methyl transferase | Not tested | YAPI | Protein | 8e-130 | 51 |
