Gene Information

Name : AFE_2032 (AFE_2032)
Accession : YP_002426436.1
Strain : Acidithiobacillus ferrooxidans ATCC 23270
Genome accession: NC_011761
Putative virulence/resistance : Virulence
Product : DNA-binding response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 1781193 - 1781855 bp
Length : 663 bp
Strand : -
Note : identified by match to protein family HMM PF00072; match to protein family HMM PF00486

DNA sequence : 
ATGCGTATTCTTCTGGTTGAAGACGACCGAATGATCGGTGAAGCCATTTCAGTTGCGCTGCGGGACGCGGCTTATGCAGT
GGACTGGGTGCGTGATGGTGAAACCGCTTTGCGGGCGATTGCCAATCAGGAACATCAGGCCATTTTTCTGGATTTGGGTT
TGCCCAAACTGGATGGTTGTACGTTGCTGCAACGTGTGCGCGCAGGGGGTAACTCCCTGCCAATCATCATTATTTCCGCC
CGCGACGCATTGGCGGATCGGGTGGAGGGGCTGGATTTGGGGGCTGATGATTATCTCGTCAAACCTTTTGCCATGGGCGA
GCTGCTGGCTCGTTTGCGCGCCATCATCCGCCGTCAGGGTGGGCAGGGCTCGCCGGTATTAGGTAATGGATCTCTGCAAC
TCGATCTAAGCACACATACGGCGCAGATCGGAGAGCTCAGCGTCCTGTTGACCAATAAGGAGTTTGCTTTATTGCAGGCA
CTGTTGCTACGTCCAGGTTCCATACTCAGTCGTGCGCAACTCGAAGAGCGCCTGTATGGCTGGGACGAAGGTGTAGAGAG
TAATAGCATCGATTTTCTGATTCACGGTCTGCGTAAGAAGCTCGGTGCCAAAGTCATCAGGAATGTGCGTGGCGCGGGTT
GGATGATCCCGCGTCAACCATGA

Protein sequence : 
MRILLVEDDRMIGEAISVALRDAAYAVDWVRDGETALRAIANQEHQAIFLDLGLPKLDGCTLLQRVRAGGNSLPIIIISA
RDALADRVEGLDLGADDYLVKPFAMGELLARLRAIIRRQGGQGSPVLGNGSLQLDLSTHTAQIGELSVLLTNKEFALLQA
LLLRPGSILSRAQLEERLYGWDEGVESNSIDFLIHGLRKKLGAKVIRNVRGAGWMIPRQP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 7e-26 44

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
AFE_2032 YP_002426436.1 DNA-binding response regulator BAC0197 Protein 2e-28 44
AFE_2032 YP_002426436.1 DNA-binding response regulator BAC0487 Protein 7e-29 42
AFE_2032 YP_002426436.1 DNA-binding response regulator BAC0288 Protein 2e-19 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
AFE_2032 YP_002426436.1 DNA-binding response regulator VFG0473 Protein 5e-32 44