Gene Information

Name : fliP (Mchl_0638)
Accession : YP_002419488.1
Strain : Methylobacterium chloromethanicum CM4
Genome accession: NC_011757
Putative virulence/resistance : Virulence
Product : flagellar biosynthesis protein FliP
Function : -
COG functional category : N : Cell motility
COG ID : COG1338
EC number : 3.1.1.3
Position : 633206 - 633988 bp
Length : 783 bp
Strand : +
Note : FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus; Bradyrhizobium have one thick flagellum and several thin flagella; the Bradyrhizobium protein in this cluster is associated with the thin flagellum

DNA sequence : 
GTGAAGAGAGCACGCGCGATCCTCGTCACCGCCGGCCTTGCCCTGGCGGCCGGCCTCACTGCCTCCGCCGCGCTGGCGCA
GGGTGCTGCGCCCGGCGGCGTCACCGGCGTGCCCGGCCTCGACGCGCTGCTGCCGCCCGGTAACGGGGCGGCCTCCGGGC
GCATCATCCAGCTCGTCGCGCTGCTCACCGTGCTGTCGCTGGCGCCGGGCCTGCTCGTGATGGTGACGAGCTTCACGCGC
TTTGCCGTCGCGTTCTCGTTCCTGCGCTCGGGGCTTGGCCTTCAGAGCACGCCGGCCAACCTGTTCCTCGTCTCGCTCGC
CCTGTTCATGACCTTCTACGTCATGGCGCCGACCTTCGACCGCGCCTGGAACGAGGGCGTGAAGCCGCTGCAGGAGAACC
GCATCAGCGAGGAGGAAGCCTTCGGCAAGATCGTCGATCCGTTCCGCGAGTTCATGACCCAGCACGTGCGCCCGAAGGAC
CTTCAGACCTTCACGGATCTGGCGAGCCGCACCTTCCCCAAGGCCGAGGCCGGCGAGAAGATCGACCTGCGCATCCTGAT
CCCCGCCTTCATGATCTCCGAGCTGCGACGGGGCTTCGAGATCGGCTTCCTGATCGTGCTGCCCTTCCTTGTCATCGACA
TCATCGTCTCCACCATCGTGATGTCGATGGGCATGATGATGCTGCCGCCGACCGTGATCTCGCTGCCGTTCAAGGTGCTG
TTCTTCATCCTGATCGACGGCTGGAACTTGCTGGTCAGCGGTTTGGTACGGTCGTTCTTCTGA

Protein sequence : 
MKRARAILVTAGLALAAGLTASAALAQGAAPGGVTGVPGLDALLPPGNGAASGRIIQLVALLTVLSLAPGLLVMVTSFTR
FAVAFSFLRSGLGLQSTPANLFLVSLALFMTFYVMAPTFDRAWNEGVKPLQENRISEEEAFGKIVDPFREFMTQHVRPKD
LQTFTDLASRTFPKAEAGEKIDLRILIPAFMISELRRGFEIGFLIVLPFLVIDIIVSTIVMSMGMMMLPPTVISLPFKVL
FFILIDGWNLLVSGLVRSFF

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lscR AAO18040.1 LscR Virulence TTSS locus Protein 9e-34 44
yscR NP_456109.1 putative type III secretion protein Virulence SPI-2 Protein 3e-33 42
ssaR CAA68199.1 secretion system apparatus, SsaR Virulence SPI-2 Protein 6e-34 42
yscR NP_805090.1 type III secretion system protein Virulence SPI-2 Protein 3e-33 42
ssaR YP_216427.1 type III secretion system protein Virulence SPI-2 Protein 8e-34 42
ssaR NP_460384.1 type III secretion system protein Virulence SPI-2 Protein 8e-34 42
hrcR AAT96262.1 HrcR Virulence S-PAI Protein 1e-29 41
hrcR AAT96303.1 HrcR Virulence S-PAI Protein 1e-29 41
hrcR AAT96343.1 HrcR Virulence S-PAI Protein 1e-29 41
hrcR ABA47279.1 HrcR Virulence S-PAI Protein 4e-31 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
fliP YP_002419488.1 flagellar biosynthesis protein FliP VFG0394 Protein 1e-34 47
fliP YP_002419488.1 flagellar biosynthesis protein FliP VFG1259 Protein 4e-47 47
fliP YP_002419488.1 flagellar biosynthesis protein FliP VFG2338 Protein 3e-45 44
fliP YP_002419488.1 flagellar biosynthesis protein FliP VFG2494 Protein 5e-46 44
fliP YP_002419488.1 flagellar biosynthesis protein FliP VFG0519 Protein 3e-34 42
fliP YP_002419488.1 flagellar biosynthesis protein FliP VFG0188 Protein 1e-32 42
fliP YP_002419488.1 flagellar biosynthesis protein FliP VFG2016 Protein 6e-44 42