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Name : VS_0234 (VS_0234) Accession : YP_002415917.1 Strain : Genome accession: NC_011753 Putative virulence/resistance : Virulence Product : capsular polysaccharide biosynthesis protein CapD Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG1086 EC number : - Position : 227666 - 229597 bp Length : 1932 bp Strand : + Note : Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pe : enzyme DNA sequence : ATGCAACGTCTAAATTTTATCTGGCACTTATCTCGCGTACATAAGCGCGGTATCAGTGTTATTATTGATAGCTTTTTTAT TATTTTTTCTTTACATGCAGCGTTGTGGACGAGATTAGGTGATGTAAGGTTTTTGAATGATAGTGATAATTTGTTACTGA TAGGCTTAACCGTAATATCAACTGTTCTTATTTTTACTAAGATAGGACTCTATCGCGCAGTTCTCAGGTATCTTACTTTT CAAGCACTCTTCGTTGTCACTTCAGGAGCAATCTTGTCTGCGTTAGCCTTGGCTGTATTTGCTTATTACCTTCAAGAGCC TATCCCTCGTACGGTACCTATTATTTATGGTGCTTACCTAGCATTGCTGTGCGGCGGCTCGCGCCTTGTTGTTAGAAACC TTGTCGCAACAACCTCAAAAGATCCTCGGGAAGAGGTTTTGATTTACGGTGCTGGTTCCGGTGGTCGTCAACTTGCCGTT GCTCTGCGAGCGTCAGAGAACTATCGAATTCGAGCGTTTATTGATGAGGATAAGACGCTTATAAACACGATGATTCTGGG CTTACCAGTTATTGAATTAGATAAATCTGAGACTTTAATCAATAAGTATGCAACTTCAAAGATATTACTTGCTATTCCTA GTGCCTCTCGTGCACGTCGTAAGCAAGTATTGGACTTATTAGCCCCCTTGCCTGTTGAGATTCAAACTGTGCCTGATATG GCCGATATTGTCTCTGGTAAGGCTAAAATTGATGAATTAACAGACGTACCAATTGAAGACCTATTAGGACGTGATGCTGT TACTCCCCAGCAAGTTTTGATGGAAGCGAACATCAAAGGAAAAGTTGTAATGGTGACTGGTGCTGGCGGTTCTATTGGCT CAGAGTTGTGTCGTCAAATCCTAAAACAGCAGCCTAAAACCTTAGTGCTCTTTGAAGTCTCTGAGTTTGGCTTATATCAA ATCGACCGCGAGCTATCTTTAATTTCCGAAAATGAAGGCTATGATATTGATATAGTGCCATTGCTAGGTTCAGTCCAACG CCCCCATCGCTTATTGACTTCAATGAAGTCTTTTGGTGTTCAGACTGTTTATCATGCAGCTGCGTATAAGCATGTTCCTT TAGTTGAGTATAATGTGGTTGAAGGTGTGCGTAATAATATTTATGGCACCTACTATACGGCTAACGCTGCAATTGAAGCG GGAGTTGAATCTTTTGTACTTATTTCAACAGATAAAGCTGTACGCCCAACTAACGTGATGGGTACAACCAAGCGGATGGC TGAGCTAGGCTTACAGGCATTGGCACAGCAAGAGAATCCAAAAGAGAGCGGAACTCGTTTTTGTATGGTGCGTTTTGGTA ATGTGCTTGGTTCTTCAGGTTCAGTGATTCCGTTGTTTAAGAAACAGATTAAAGCCGGCGGCCCACTCACGGTCACTCAT CCTGATATCACTCGCTTCTTTATGACTATTCCTGAGGCAGCGCAACTGGTTATTCAAGCCGGCGCTATGGGTAAAGGCGG TGATGTGTTCGTACTTGATATGGGCGAATCAGTAAAAATTACAGATCTAGCGGAAAACCTCATTAGACTTTCAGGCCTAT CAGTTAAGAATGAAGATAATCAACATGGTGATATTGAGATTAAATTTTCAGGTTTACGCCCTGGAGAGAAGTTGTATGAA GAGTTATTGATTGGTGATAATGTCGCGCGTACAGCTCACGAACGAATTATGACCGCACAAGAGGTGTTCTTGCCGATAGA TGAGTATGACACGCTACTTGAATCTTTAGACTTTGCTTGTCACAACCTAGAGCATGATACGATTCGACAATTGCTTCTTG ATGCGCCGACTGGGTTTTCGCCAACGGATGGTGTTGGTGATTTGGTTTGGAATGCGAGTCAAATGCAAGAAGAGCTTATT GAAAACCGCTAG Protein sequence : MQRLNFIWHLSRVHKRGISVIIDSFFIIFSLHAALWTRLGDVRFLNDSDNLLLIGLTVISTVLIFTKIGLYRAVLRYLTF QALFVVTSGAILSALALAVFAYYLQEPIPRTVPIIYGAYLALLCGGSRLVVRNLVATTSKDPREEVLIYGAGSGGRQLAV ALRASENYRIRAFIDEDKTLINTMILGLPVIELDKSETLINKYATSKILLAIPSASRARRKQVLDLLAPLPVEIQTVPDM ADIVSGKAKIDELTDVPIEDLLGRDAVTPQQVLMEANIKGKVVMVTGAGGSIGSELCRQILKQQPKTLVLFEVSEFGLYQ IDRELSLISENEGYDIDIVPLLGSVQRPHRLLTSMKSFGVQTVYHAAAYKHVPLVEYNVVEGVRNNIYGTYYTANAAIEA GVESFVLISTDKAVRPTNVMGTTKRMAELGLQALAQQENPKESGTRFCMVRFGNVLGSSGSVIPLFKKQIKAGGPLTVTH PDITRFFMTIPEAAQLVIQAGAMGKGGDVFVLDMGESVKITDLAENLIRLSGLSVKNEDNQHGDIEIKFSGLRPGEKLYE ELLIGDNVARTAHERIMTAQEVFLPIDEYDTLLESLDFACHNLEHDTIRQLLLDAPTGFSPTDGVGDLVWNASQMQEELI ENR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| cap1D | AAA64643.1 | type 1 capsule synthesis gene | Virulence | SCCcap1 | Protein | 3e-81 | 47 |
| SSP0063 | YP_300153.1 | capsular polysaccharide biosynthesis protein | Not tested | SCC15305cap | Protein | 9e-76 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| VS_0234 | YP_002415917.1 | capsular polysaccharide biosynthesis protein CapD | VFG0029 | Protein | 5e-122 | 50 |
