Gene Information

Name : intIA (VS_1890)
Accession : YP_002417498.1
Strain :
Genome accession: NC_011753
Putative virulence/resistance : Unknown
Product : Site-specific recombinase IntIA
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG4974
EC number : -
Position : 2032812 - 2033786 bp
Length : 975 bp
Strand : +
Note : Evidence 2a : Function of homologous gene experimentally demonstrated in another organism; Product type e : enzyme

DNA sequence : 
ATGCAAAAATCACCATTTCTAGCCTATATACAAGAGTATATGTTGGGGAGACACTATGCTCTTCGTACTACACAGGCGTA
CATTTATTGGATTCACCAGTACATTCTTTATCATAATAAAAAGCATCCCAGAAATTTGACGTCGAGGCATGTAGAAGACT
TCCTGACGCACTTAGTTGTTGATAGGAAGTCAGCACAGAAAACGCAGAGCCTAGCCCTCAATGCGATAGTCTTTTTATAC
AAAGAAATCATCCAGGAACCCATTGAACTTGATATGCAGTTTCGCCGTTCAGACAAATCCCGAAAGTTGCCAACGGTTAT
GACGCCAGAAGAAATTAGCAGGTTCTTTAACCACTGCTCACCTAACTTCAAATTACCTTACCAATTAATGTATGGGTCAG
GCCTACGGTTGATGGAGTGTCTACGCTTACGAATGCAAGACATCGACTATGACTACAAATCAGTGCGAGTGTGGCAAGGA
AAAGGAGGAAAGAACCGTATAGTGACAATAGCCCCCGAGCTTTTCCCTTCAATCAAGTTACAACAACAGAAATCCGCAGA
ATACTATCAGCAAGATATACATGATAAAGCTTTTTCTGGCGTATACCTGCCCGACTCTCTAGCTAAAAAATACCCGAGTG
CAGAAAGAAGCTTAAATTGGCAATTTCTTTTTCCTTCTGCTCGTCTGGCACCCGATTTGCGAACAGGTGAATTACGTAGG
CATCATATTCATCCAACAGCACTACAAAAACACATTAAGGTCGCTAGCCAAAAAGCCGACATTGAGAAAAATATTTCCTG
CCACACTTTAAGGCATTCATTTGCGACGCACCTTCTTCAAAGCGGTGCTGATATTAGAACAGTTCAAGAACAGCTTGGAC
ATACCGATCTAAAAACAACGCAAATATATACTCACATCATAGATAGAGGAGCCAACGGCGTAATTAGTCCACTATCAAAA
ATATTCGTTAAGTAA

Protein sequence : 
MQKSPFLAYIQEYMLGRHYALRTTQAYIYWIHQYILYHNKKHPRNLTSRHVEDFLTHLVVDRKSAQKTQSLALNAIVFLY
KEIIQEPIELDMQFRRSDKSRKLPTVMTPEEISRFFNHCSPNFKLPYQLMYGSGLRLMECLRLRMQDIDYDYKSVRVWQG
KGGKNRIVTIAPELFPSIKLQQQKSAEYYQQDIHDKAFSGVYLPDSLAKKYPSAERSLNWQFLFPSARLAPDLRTGELRR
HHIHPTALQKHIKVASQKADIEKNISCHTLRHSFATHLLQSGADIRTVQEQLGHTDLKTTQIYTHIIDRGANGVISPLSK
IFVK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
intI1 AGK07071.1 IntI1 integrase Not tested SGI1 Protein 1e-56 42
intI1 AFV53119.1 IntI1 integrase Not tested AbGRI2-1 Protein 1e-56 42
unnamed AAL08437.1 Tn21 integrase IntI1 Not tested SRL Protein 2e-56 42
intI1 AGK36642.1 IntI1 integrase Not tested AbaR26 Protein 1e-56 42
intI1 ABB48427.1 IntI1 integrase Not tested SGI1 Protein 1e-56 42
unnamed ACF06155.1 class 1 integrase Not tested Tn5036-like Protein 9e-57 42
intI CAJ77082.1 Integrase Not tested AbaR1 Protein 1e-56 42
intI YP_001844881.1 integrase Not tested AbaR20 Protein 1e-56 42
intI1 AGK07098.1 IntI1 integrase Not tested SGI1 Protein 9e-57 42
intI1 AGF35060.1 IntI1 integrase Not tested SGI1 Protein 1e-56 42
intI1 YP_005797130.1 integrase Not tested AbaR4e Protein 1e-56 42
intI1 AGK06930.1 IntI1 integrase Not tested SGI1 Protein 1e-56 42
intI1 YP_005797145.1 integrase Not tested AbaR4e Protein 1e-56 42
intI1 AGK06967.1 IntI1 integrase Not tested SGI1 Protein 1e-56 42
intI1 ACN81019.1 IntI1 integrase Not tested AbaR5 Protein 1e-56 42
intI1 AGK07013.1 IntI1 integrase Not tested SGI1 Protein 1e-56 42
EC042_4092 YP_006098375.1 integrase Not tested Tn2411 Protein 1e-56 42
intI1 AFL65913.1 class 1 integrase Not tested SGI1-J6 Protein 4e-42 41
int1 YP_005160012.1 integrase Not tested Not named Protein 3e-46 41
intI1 CAB46685.1 DNA integrase Not tested Not named Protein 4e-56 41
intI1 AAK02045.1 integrase Not tested SGI1 Protein 4e-56 41
intI1 ABZ01842.1 IntI1 Not tested SGI2 Protein 4e-56 41
intI CAJ77028.1 Integrase Not tested AbaR1 Protein 4e-56 41
intI1 ACY75520.1 integrase Not tested Tn6060 Protein 4e-56 41
intI1 ACY75535.1 integrase Not tested Tn6060 Protein 4e-56 41
intI1 AGF34986.1 IntI1 integrase Not tested SGI1 Protein 4e-56 41
intI1 AGF35026.1 IntI1 integrase Not tested SGI1 Protein 4e-56 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
intIA YP_002417498.1 Site-specific recombinase IntIA VFG1028 Protein 1e-56 42