Gene Information

Name : VS_1655 (VS_1655)
Accession : YP_002417266.1
Strain :
Genome accession: NC_011753
Putative virulence/resistance : Virulence
Product : DNA repair protein; prophage protein
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2003
EC number : -
Position : 1788053 - 1788523 bp
Length : 471 bp
Strand : +
Note : Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pf : factor

DNA sequence : 
ATGAGAACACTTTCACCACCACTACTCTCACAGCAAGAGCATGAACATCGTGTTCTAGAAAAAGCCGCTGAGATATTAGA
AGATCGTTATGTACGAGGCGATGTATTTACCAACCCACAAGCTACCCGAGACTATTTGCGATTTAAGATTGGCGGCAGTG
AACGTGAAGTGTTCGCCGTCATGTTGCTAGATAACCAACACCGATTAATTGAGTTTGAGGAGTTGTTTCAAGGGACTATT
GATGCGGCAAGCGTCTATCCAAGGGAGGTAGTAAAGACTGCTCTGAAGGCCAATGCGGCAGCGGTTATCTTTGCTCATAA
CCATCCATCAGGCGACTCTGCGCCATCGCAAGCAGACAGGCGCATCACGACGAGATTGCAAGATGCTTTAGCGCTCATTG
ATGTTCGAGTTCTGGATCATGTTGTTGTCGGAGAACAATGCACATCGTTTGCAGAGAGGGGCTGGTTATGA

Protein sequence : 
MRTLSPPLLSQQEHEHRVLEKAAEILEDRYVRGDVFTNPQATRDYLRFKIGGSEREVFAVMLLDNQHRLIEFEELFQGTI
DAASVYPREVVKTALKANAAAVIFAHNHPSGDSAPSQADRRITTRLQDALALIDVRVLDHVVVGEQCTSFAERGWL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VC0510 NP_230161.1 DNA repair protein RadC-like protein Not tested VSP-2 Protein 1e-50 76
VC1786 NP_231421.1 DNA repair protein RadC Not tested VPI-2 Protein 6e-50 74
VC0395_A1383 YP_001217326.1 DNA repair protein RadC Not tested VPI-2 Protein 6e-50 74
VPI2_0034 ACA01849.1 DNA repair protein RadC Not tested VPI-2 Protein 2e-50 74
unnamed AAK00479.1 unknown Not tested SHI-1 Protein 1e-24 56
Z1217 NP_286752.1 RadC family DNA repair protein Not tested TAI Protein 2e-24 56
unnamed CAD42098.1 hypothetical protein Not tested PAI II 536 Protein 2e-24 56
z1217 CAD33787.1 Z1217 protein Not tested PAI I 536 Protein 2e-24 56
yeeS ADD91702.1 YeeS Not tested PAI-I AL862 Protein 1e-24 56
unnamed AAL08475.1 unknown Not tested SRL Protein 1e-24 56
yeeS NP_838484.1 RADC family DNA repair protein Not tested SHI-1 Protein 1e-24 56
yeeS NP_708770.1 RADC family DNA repair protein Not tested SHI-1 Protein 1e-24 56
aec73 AAW51756.1 Aec73 Not tested AGI-3 Protein 2e-24 56
yeeS CAI43901.1 YeeS protein Not tested LEE Protein 8e-25 56
unnamed AAL67345.1 intergenic-region protein Not tested PAI II CFT073 Protein 2e-24 56
yeeS CAE85201.1 YeeS protein Not tested PAI V 536 Protein 2e-24 56
yeeS CAI43846.1 YeeS protein Not tested LEE Protein 1e-24 56
Z1657 NP_287160.1 RadC family DNA repair protein Not tested TAI Protein 1e-23 55
radC AAN62140.1 putative DNA repair protein RadC Not tested PAGI-2(C) Protein 5e-31 53
yeeS AAZ04458.1 putative RadC-like protein Not tested PAI I APEC-O1 Protein 9e-25 52
yeeS YP_854323.1 radC-like protein YeeS Not tested PAI I APEC-O1 Protein 1e-24 52
c5152 NP_757000.1 radC-like protein yeeS Not tested PAI II CFT073 Protein 1e-24 52
unnamed CAD66203.1 hypothetical protein Not tested PAI III 536 Protein 2e-24 51
ECO103_3589 YP_003223446.1 radC-like protein YeeS Not tested LEE Protein 3e-24 51
radC AAN62275.1 putative DNA repair protein RadC Not tested PAGI-3(SG) Protein 4e-24 48

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
VS_1655 YP_002417266.1 DNA repair protein; prophage protein VFG1119 Protein 2e-50 74
VS_1655 YP_002417266.1 DNA repair protein; prophage protein VFG1617 Protein 1e-24 56
VS_1655 YP_002417266.1 DNA repair protein; prophage protein VFG1528 Protein 6e-25 56
VS_1655 YP_002417266.1 DNA repair protein; prophage protein VFG0660 Protein 4e-25 56
VS_1655 YP_002417266.1 DNA repair protein; prophage protein VFG1066 Protein 6e-25 56
VS_1655 YP_002417266.1 DNA repair protein; prophage protein VFG1678 Protein 9e-25 51