|
Name : yghF (ECUMN_3445) Accession : YP_002414110.1 Strain : Escherichia coli UMN026 Genome accession: NC_011751 Putative virulence/resistance : Virulence Product : putative type II secretion protein GspC Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG3031 EC number : - Position : 3561880 - 3562839 bp Length : 960 bp Strand : - Note : part of the general (type II) secretion pathway (GSP), a signal sequence-dependent process responsible for protein export; involved in trans-location of exoproteins from the cytoplasm to the periplasm DNA sequence : TTGGCGCGGGTTGTTTTTCGTGACGCACGAATTTATCTCATTCAATGGCTGACAAAAATTCGTCACACTCTTAACCAGAG ACAATCTCTTAATACAGACAAAGAGCATCTGCGAAAAATTGTACGCGCGATGTTCTGGCTGATGCTGCTTATTATTTCTG CAAAAGTGGCGCATTCACTCTGGCGCTATTTCTCCTTTTCTGCGGAATATACGGCGGTTTCCCCATCGGCGAATAAACCG CCCCGTGCAGATGCAAAAACGTTCGATAAAAATGACGTGCAATTAATCAGCCAGCAAAACTGGTTTGGCAAATATCAGCC TGTCGCCGTGCCGGTAAAACAACCTGAACCTGCGCCTGTGGCAGAAACACGTCTTAATGTGGTGCTGCGCGGGATCGCCT TTGGTGCCAGACCCGGCGCGGTTATTGAAGAAGGCGGTAAACAGCAGGTCTATTTGCAGGGTGAAACGCTTGGCTCGCAC AACGCAGTGATTGAGGAAATCAATCGCGACCATGTGATGCTGCGCTATCAGGGAAAAATAGAGCGCCTGAGCCTGGCAGA AGAGGAGCGTTCCACCGTAGCCGTGACCAACAAAAAAGCCATCAGTGACGAAGCAAAGCAAGCTGTTGCTGAGCCTGCTG CCAGTGCGCCAGTTGAGATCCCGACTGCTGTGCGTCAGGCACTGGCGAAAGATCCGCAGAAAATTTTTAACTATATCCAG CTTACGCCTGTGCGTAAGGAGGGGATTGTCGGTTATGCAGTGAAGCCGGGGGCAGATCGTTCTCTGTTCGATGCCAGCGG TTTTAAGGAAGGCGATATCGCCATTGCGCTAAATCAGCAGGATTTCACTGATCCACGAGCAATGATTGCTCTGATGCGGC AGTTACCTTCAATGGATTCCATTCAACTTACGGTTTTACGCAAGGGTGCGCGCTACGACATTTCCATCGCGCTGCGCTAA Protein sequence : MARVVFRDARIYLIQWLTKIRHTLNQRQSLNTDKEHLRKIVRAMFWLMLLIISAKVAHSLWRYFSFSAEYTAVSPSANKP PRADAKTFDKNDVQLISQQNWFGKYQPVAVPVKQPEPAPVAETRLNVVLRGIAFGARPGAVIEEGGKQQVYLQGETLGSH NAVIEEINRDHVMLRYQGKIERLSLAEEERSTVAVTNKKAISDEAKQAVAEPAASAPVEIPTAVRQALAKDPQKIFNYIQ LTPVRKEGIVGYAVKPGADRSLFDASGFKEGDIAIALNQQDFTDPRAMIALMRQLPSMDSIQLTVLRKGARYDISIALR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspC | CAE85235.1 | GspC, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 1e-119 | 98 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| yghF | YP_002414110.1 | putative type II secretion protein GspC | VFG2046 | Protein | 8e-117 | 96 |
