Gene Information

Name : papA (ECUMN_3339)
Accession : YP_002414017.1
Strain : Escherichia coli UMN026
Genome accession: NC_011751
Putative virulence/resistance : Virulence
Product : P-fimbriae major subunit
Function : -
COG functional category : N : Cell motility
COG ID : COG3539
EC number : -
Position : 3461061 - 3461597 bp
Length : 537 bp
Strand : -
Note : Evidence 2b : Function of strongly homologous gene; PubMedId : 10678978; Product type s : structure

DNA sequence : 
ATGATTAAGTCGGTTATTGCCGGTGCGGCAGCTATGGCAGTGGTGTCTTTTGGTGCAAATGCAGCTCCACAGGGGCAGGG
AAAAGTAACTTTTAACGGAACTGTAGTAGATGCACCATGTGGTATTGATGCTCAGTCTGCTGATCAATCTATTGATTTCG
GACAAGTATCCAAAGTATTACTGAATAATGGCGGGACATCAACGCCGAAGAGTTTTGATATTAAGCTTACTGATTGTGAT
ATTACTAACTATAAAGCTGGTAATAAAGCGGGAACAGTATCTCTGACGTTTTCAGGTGTTCAGGCTGGTACAGATATGCT
ACAAACGGTTGGTTCAACTAATACCGCAATCCTTATTACTGATCCTCATGGTAAAGCTGTCAAATTTGATGGTGCAACTG
CGACAGGTGTATCCTCTCTTGTAGACGGAGACAATACTATTCATTTTACTGCTTTGGTTAAAAAAGACACAAGTGGTAAT
GATGTAGCTGAAGGTGCTTTCTCAGCAGTTGCGAATTTCAACCTGACTTATCAGTAA

Protein sequence : 
MIKSVIAGAAAMAVVSFGANAAPQGQGKVTFNGTVVDAPCGIDAQSADQSIDFGQVSKVLLNNGGTSTPKSFDIKLTDCD
ITNYKAGNKAGTVSLTFSGVQAGTDMLQTVGSTNTAILITDPHGKAVKFDGATATGVSSLVDGDNTIHFTALVKKDTSGN
DVAEGAFSAVANFNLTYQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
papA YP_002414017.1 P-fimbriae major subunit Not tested Not named Protein 1e-75 100
papA NP_755467.1 PapA protein Virulence PAI I CFT073 Protein 6e-57 80
papA AAC61718.1 PapA Virulence PAI I CFT073 Protein 2e-37 77
prfA CAD42031.1 PrfA protein Virulence PAI II 536 Protein 5e-59 74
papA AAL67417.1 PapA Virulence PAI II CFT073 Protein 2e-56 72
papA_2 NP_757036.1 PapA protein Virulence PAI II CFT073 Protein 6e-56 72
papA YP_854256.1 major fibrial protein Virulence PAI I APEC-O1 Protein 4e-43 63
papA AAZ04426.1 major fibrial protein Virulence PAI I APEC-O1 Protein 3e-43 63
pixA CAE85161.1 PixA protein Not tested PAI V 536 Protein 4e-35 52

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
papA YP_002414017.1 P-fimbriae major subunit VFG0882 Protein 2e-57 80
papA YP_002414017.1 P-fimbriae major subunit VFG1550 Protein 2e-59 74
papA YP_002414017.1 P-fimbriae major subunit VFG0893 Protein 2e-56 72