|
Name : papC (ECIAI39_4589) Accession : YP_002410453.1 Strain : Escherichia coli IAI39 Genome accession: NC_011750 Putative virulence/resistance : Virulence Product : outer membrane usher protein PapC Function : - COG functional category : N : Cell motility COG ID : COG3188 EC number : - Position : 4787118 - 4789649 bp Length : 2532 bp Strand : + Note : Evidence 1b : Function experimentally demonstrated in the studied species; PubMedId : 2897064, 1357526, 12399496, 2572580, 7909802, 9501230; Product type f : factor DNA sequence : GTGAATCTGGTGATGCGTGGAATGAAAGACAGAATACCTTTTGCAGTCAACAATATTACCTGTGTGATATTGTTGTCTCT GTTTTGTAACGCAGCCAGTGCCGTTGAGTTTAATACAGATGTACTTGACGCGGCGGACAAGAAAAATATTGACTTCACCC GTTTTTCAGAAGCTGGTTATGTTCTGCCGGGGCAATATCTTCTGGATGTGATTGTTAACGGGCAAAGTATTTCTCCCGCA TCGTTACAGATTTCATTTGTTGAACCTCAGTCGTCAGGAGATAAGGCAGAAAAAAAATTGCCACAGGCCTGTCTGACATC AGATATGGTCAGACTGATGGGGTTAACAGCAGAATCTCTGGATAAAGTTGTTTACTGGCATGATGGTCAGTGTGCGGATT TTCATGGGTTGCCGGGAGTGGATATTCGTCCTGATACCGGAGCGGGCGTATTACGCATCAATATGCCGCAGGCCTGGCTT GAGTATTCTGATGCCACCTGGCTGCCTCCCTCACGCTGGGACGACGGCATTCCCGGACTGATGCTGGATTATAACCTCAA CGGGACGGTTTCCCGTAATTATCAGGGAGGAGACTCTCATCAGTTCAGTTATAACGGGACTGTGGGGGGGAATCTGGGGC CCTGGCGCCTGCGGGCTGACTATCAGGGAAGCCAGGAGCAGAGCCGCTACAACGGGGAAAAAACGACAAACAGAAATTTC ACATGGAGTCGCTTTTATCTGTTCCGTGCCATTCCACGATGGCGGGCAAACCTGACGCTGGGCGAGAATAATATCAACTC AGATATATTCCGGTCATGGAGTTATACGGGAGCCAGCCTGGAAAGCGATGACCGGATGCTGCCACCCAGACTGCGAGGCT ATGCACCGCAGATTACCGGGATTGCGGAGACTAATGCCCGTGTTGTGGTGTCGCAGCAGGGACGGGTGCTGTACGACTCG ATGGTCCCCGCAGGGCCATTCAGTATTCAGGACCTGGACAGTTCAGTTCGCGGACGTCTTGATGTTGAGGTTATTGAACA GAACGGACGGAAGAAAACCTTTCAGGTCGATACGGCCTCGGTTCCTTATCTGACGCGTCCGGGACAGGTCCGGTATAAAC TTGTCTCCGGTCGTTCCCGCGGATACGGGCATGAGACCGAAGGGCCTGTATTTGCGACCGGAGAGGCGTCCTGGGGGCTC AGTAACCAGTGGTCGCTGTATGGCGGGGCTGTGCTTGCCGGTGATTATAATGCACTGGCAGCCGGTGCCGGCTGGGACCT GGGTGTGCCGGGGACCCTTTCCGCTGATATCACGCAGTCAGTAGCCCGTATTGAGGGAGAGAGAACGTTTCAGGGAAAAT CCTGGCGTCTTAGCTACTCCAAACGGTTTGATAATGCGGATGCCGACATTACGTTCGCCGGGTATCGTTTCTCAGAGCGA AACTATATGACCATGGAGCAGTACCTGAACGCCCGCTACCGTAATGATTACAGCAGTCGGGAAAAAGAGATGTATACCGT TACGCTGAATAAAAACGTGGCGGACTGGAACACCTCTTTTAACCTGCAGTACAGCCGTCAGACATACTGGGACATACGGA AAACGGACTATTATACGGTGAGCGTCAACCGCTACTTTAATGTTTTCGGACTGCAGGGAGTGGCGGTTGGATTGTCAGCC TCAAGGTCTAAATATCTGGGGCGTGATAACGATTCTGCTTACCTGCGTATATCCGTGCCGCTGGGAACGGGGACAGCGAG CTACAGTGGCAGTATGAGTAATGACCGTTATGTGAATATGGCCGGCTACACTGACACGTTCAATGACGGTCTGGACAGCT ACAGCCTGAACGCCGGCCTTAACAGTGGCGGTGGACTGACATCGCAACGTCAGATTAATGCCTATTACAGTCATCGTAGT CCGCTGGCAAATTTGTCCGCGAATATTGCATCCCTGCAGAAAGGATATACGTCTTTCGGCGTCAGTGCTTCCGGTGGGGC AACAATTACCGGAAAAGGTGCGGCGTTACATGCAGGGGGAATGTCCGGTGGAACACGTCTTCTTGTTGACACGGATGGTG TGGGAGGTGTACCGGTTGATGGCGGGCAGGTGGTGACAAATCGCTGGGGAACGGGCGTGGTGACTGACATCAGCAGTTAT TACCGGAATACAACCTCTGTTGACCTGAAGCGCTTACCGGATGATGTGGAAGCAACCCGTTCTGTTGTGGAATCGGCGCT GACAGAAGGTGCCATTGGTTACCGGAAATTCAGCGTGCTTAAAGGGAAACGTCTGTTTGCAATACTGCGTCTTGCTGATG GCTCTCAGCCCCCGTTTGGTGCCAGTGTAACCAGTGAAAAAGGCCGGGAGCTGGGCATGGTGGCCGACGAAGGCCTTGCC TGGCTGAGTGGCGTGACGCCGGGGGAAACCCTGTCGGTAAACTGGGATGGAAAAATACAGTGTCAGGTAAATGTACCGGA GACAGCAATATCTGACCAGCAGTTATTGCTTCCCTGTACGCCTCAGAAATAA Protein sequence : MNLVMRGMKDRIPFAVNNITCVILLSLFCNAASAVEFNTDVLDAADKKNIDFTRFSEAGYVLPGQYLLDVIVNGQSISPA SLQISFVEPQSSGDKAEKKLPQACLTSDMVRLMGLTAESLDKVVYWHDGQCADFHGLPGVDIRPDTGAGVLRINMPQAWL EYSDATWLPPSRWDDGIPGLMLDYNLNGTVSRNYQGGDSHQFSYNGTVGGNLGPWRLRADYQGSQEQSRYNGEKTTNRNF TWSRFYLFRAIPRWRANLTLGENNINSDIFRSWSYTGASLESDDRMLPPRLRGYAPQITGIAETNARVVVSQQGRVLYDS MVPAGPFSIQDLDSSVRGRLDVEVIEQNGRKKTFQVDTASVPYLTRPGQVRYKLVSGRSRGYGHETEGPVFATGEASWGL SNQWSLYGGAVLAGDYNALAAGAGWDLGVPGTLSADITQSVARIEGERTFQGKSWRLSYSKRFDNADADITFAGYRFSER NYMTMEQYLNARYRNDYSSREKEMYTVTLNKNVADWNTSFNLQYSRQTYWDIRKTDYYTVSVNRYFNVFGLQGVAVGLSA SRSKYLGRDNDSAYLRISVPLGTGTASYSGSMSNDRYVNMAGYTDTFNDGLDSYSLNAGLNSGGGLTSQRQINAYYSHRS PLANLSANIASLQKGYTSFGVSASGGATITGKGAALHAGGMSGGTRLLVDTDGVGGVPVDGGQVVTNRWGTGVVTDISSY YRNTTSVDLKRLPDDVEATRSVVESALTEGAIGYRKFSVLKGKRLFAILRLADGSQPPFGASVTSEKGRELGMVADEGLA WLSGVTPGETLSVNWDGKIQCQVNVPETAISDQQLLLPCTPQK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| prfC | CAD42029.1 | PrfC protein | Virulence | PAI II 536 | Protein | 0.0 | 100 |
| papC | YP_002414015.1 | Outer membrane usher protein PapC | Not tested | Not named | Protein | 0.0 | 100 |
| papC | YP_854254.1 | outer membrane usher protein PapC | Virulence | PAI I APEC-O1 | Protein | 0.0 | 99 |
| papC | NP_755465.1 | PapC protein | Virulence | PAI I CFT073 | Protein | 0.0 | 99 |
| papC_2 | NP_757034.1 | PapC protein | Virulence | PAI II CFT073 | Protein | 0.0 | 99 |
| papC | AAZ04424.1 | outer membrane usher protein | Virulence | PAI I APEC-O1 | Protein | 0.0 | 99 |
| pixC | CAE85159.1 | PixC protein | Not tested | PAI V 536 | Protein | 0.0 | 72 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| papC | YP_002410453.1 | outer membrane usher protein PapC | VFG1548 | Protein | 0.0 | 100 |
| papC | YP_002410453.1 | outer membrane usher protein PapC | VFG0895 | Protein | 0.0 | 99 |
| papC | YP_002410453.1 | outer membrane usher protein PapC | VFG0884 | Protein | 0.0 | 99 |
