Gene Information

Name : papA (ECIAI39_4587)
Accession : YP_002410451.1
Strain : Escherichia coli IAI39
Genome accession: NC_011750
Putative virulence/resistance : Virulence
Product : major pilin protein PapA
Function : -
COG functional category : N : Cell motility
COG ID : COG3539
EC number : -
Position : 4785833 - 4786429 bp
Length : 597 bp
Strand : +
Note : Evidence 1b : Function experimentally demonstrated in the studied species; PubMedId : 6140260, 1357526, 10049807; Product type s : structure

DNA sequence : 
GTGTGTTCAGTAATGAAAAAGAGGTTGTTATTTATGATTAAGTCGGTTATTGCCGGTGCGGTAGCTATGGCAGTGGTGTC
TTTTGGTGCATATGCTGCTCCAACTATTCCTCAGGGGCAGGGTAAAGTAACTTTTAACGGAACTGTTGTTACTGCTCCAT
GCGGCATTTCTCAGAAATCAGCTGATCAGTCTATTGATTTTGGGCAGCTTTCAAAAAGCTTCCTTGCGGCAGGAGGTGTA
TCCAAACCAATGAATTTAGATATTGAATTGGTTAATTGTGATATCACTTCATTTAAGGGGGGGGGAGGAAGCCAGGCAGC
AAAAAAAGGGACTGTGAAGCTGGCTTTTAGTGGTCCAAGGGTTTCTGGTCATAATGAGGAGTTAGATACCAGCGGGGGGA
CAGGTACTGCAATTGTAGTTCAGGCTGCAGGTAAAAACGTTTCTTTCGATGGCACAGAAGGTGATGCTAATACCCTGAAA
GATGGAGATAATGTGCTGCATTATACTGCTGTTGTTAAGAAGTCGTCAGCCGCTGGTGCCACTGTTACTGAAGGTGCCTT
CTCAGCAGTTGCGAATTTCAACCTGACTTATCAGTAA

Protein sequence : 
MCSVMKKRLLFMIKSVIAGAVAMAVVSFGAYAAPTIPQGQGKVTFNGTVVTAPCGISQKSADQSIDFGQLSKSFLAAGGV
SKPMNLDIELVNCDITSFKGGGGSQAAKKGTVKLAFSGPRVSGHNEELDTSGGTGTAIVVQAAGKNVSFDGTEGDANTLK
DGDNVLHYTAVVKKSSAAGATVTEGAFSAVANFNLTYQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
papA AAZ04426.1 major fibrial protein Virulence PAI I APEC-O1 Protein 4e-66 81
papA YP_854256.1 major fibrial protein Virulence PAI I APEC-O1 Protein 6e-66 81
papA NP_755467.1 PapA protein Virulence PAI I CFT073 Protein 1e-53 68
papA_2 NP_757036.1 PapA protein Virulence PAI II CFT073 Protein 5e-52 66
papA AAL67417.1 PapA Virulence PAI II CFT073 Protein 1e-49 65
papA YP_002414017.1 P-fimbriae major subunit Not tested Not named Protein 1e-39 60
prfA CAD42031.1 PrfA protein Virulence PAI II 536 Protein 4e-41 59
pixA CAE85161.1 PixA protein Not tested PAI V 536 Protein 4e-35 53

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
papA YP_002410451.1 major pilin protein PapA VFG0882 Protein 3e-54 68
papA YP_002410451.1 major pilin protein PapA VFG0893 Protein 2e-52 66
papA YP_002410451.1 major pilin protein PapA VFG1550 Protein 2e-41 59