|
Name : epsD (ECIAI39_3456) Accession : YP_002409366.1 Strain : Escherichia coli IAI39 Genome accession: NC_011750 Putative virulence/resistance : Virulence Product : general secretion pathway protein D Function : - COG functional category : N : Cell motility COG ID : COG1450 EC number : - Position : 3607684 - 3609744 bp Length : 2061 bp Strand : - Note : Evidence 2b : Function of strongly homologous gene; Product type t : transporter DNA sequence : GTGTTTTGGCGTGATATGACGTTGTCGGTCTGGCGTAAGAAGACAACTGGCCTCAAAACAAAAAAGCGTTTACTGGCGCT GGTGCTGGCAGCGGCATTATGCAGTTCACCGGTCTGGGCGGAAGAAGCCACTTTCACCGCTAATTTTAAAGATACCGACC TGAAATCGTTCATCGAAACCGTCGGCGCTAACCTTAATAAAACCATCATTATGGGGCCGGGCGTTCAGGGGAAAGTGAGT ATTCGCACCATGACCCCGCTCAATGAACGCCAGTATTACCAGCTATTCCTTAACCTGCTGGAAGCACAGGGGTATGCCGT CGTACCGATGGAAAACGACGTGCTGAAGGTGGTGAAATCCAGTGCCGCGAAAGTCGAGCCGCTGCCGCTGGTTGGTGAAG GCAGCGACAACTACGCGGGCGATGAAATGGTCACCAAAGTCGTGCCGGTACGTAATGTGTCGGTACGCGAGCTGGCACCG ATTCTGCGCCAGATGATCGACAGCGCAGGCTCAGGCAACGTTGTTAATTACGATCCCTCCAACGTGATTATGCTTACCGG ACGCGCCTCAGTTGTGGAGCGCCTGACGGAAGTGATCCAGCGCGTGGATCATGCGGGTAATCGCACCGAAGAGGTGATCC CGCTGGATAACGCCTCGGCTTCGGAAATCGCCCGCGTGCTGGAAAGCCTGACGAAAAACAGCGGCGAGAACCAGCCTGCG ACGCTGAAATCTCAAATTGTCGCCGACGAACGCACCAACAGTGTGATTGTCAGTGGTGACCCGGCCACGCGGGACAAAAT GCGCCGCCTGATCCGTCGGCTGGACTCAGAAATGGAACGCAGCGGCAACAGCCAGGTTTTCTATCTCAAATACAGCAAAG CCGAAGATCTGGTCGATGTACTGAAGCAGGTCAGCGGCACGCTCACGGCGGCTAAAGAAGAGGCGGAAGGCACCGTCGGT AGCGGGCGTGAGGTTGTCTCCATCGCCGCCAGCAAACACAGTAATGCCCTGATTGTTACCGCGCCGCAGGACATCATGCA GTCGCTGCAAAGCGTGATTGAACAACTGGATATTCGCCGTGCTCAGGTGCACGTCGAGGCGTTGATCGTGGAAGTTGCCG AAGGTAGCAATATCAATTTCGGCGTGCAGTGGGCGTCGAAAGATGCCGGATTAATGCAGTTTGCTAACGGTACGCAGATC CCTATTGGCACGCTGGGTGCAGCCATTTCTCAGGCAAAACCGCAGAAAGGCTCCACGGTGATCAGTGAAAACGGCGCTAC CACCATTAACCCGGATACTAACGGCGATCTCTCCACGCTCGCTCAGCTTCTTTCTGGCTTTAGCGGTACGGCGGTTGGCG TGGTGAAAGGCGACTGGATGGCGCTGGTACAGGCGGTCAAAAACGACTCCAGCTCGAACGTGCTCTCCACGCCGAGTATC ACCACGCTGGACAACCAGGAAGCCTTCTTCATGGTGGGCCAGGACGTTCCGGTATTAACCGGCTCTACTGTTGGCTCTAA TAACAGCAATCCTTTCAATACGGTAGAGAGGAAAAAAGTCGGCATCATGCTGAAAGTCACGCCGCAGATTAACGAAGGAA ACGCGGTACAGATGGTGATTGAGCAGGAAGTGTCGAAGGTGGAAGGACAGACCAGTCTCGACGTCGTGTTTGGCGAGCGC AAACTGAAAACCACCGTGCTGGCAAACGATGGTGAGCTGATCGTGCTTGGCGGTCTGATGGACGATCAGGCGGGAGAAAG CGTGGCGAAAGTGCCGCTGCTTGGCGATATCCCATTGATTGGTAACCTGTTTAAATCGACGGCGGATAAAAAAGAAAAAC GTAACCTGATGGTATTTATCCGCCCGACCATTCTGCGTGACGGTATGGCGGCAGACGGCGTGTCGCAGCGCAAATATAAC TATATGCGCGCCGAACAGATCTATCGCGATGAGCAAGGCTTGAGCCTGATGCCGCACACCGCGCAGCCGGTACTGCCAGC GCAAAATCAGGCTCTACCGCCAGAAGTTCGCGCGTTCCTTAATGCCGGGAGAACGCGTTAA Protein sequence : MFWRDMTLSVWRKKTTGLKTKKRLLALVLAAALCSSPVWAEEATFTANFKDTDLKSFIETVGANLNKTIIMGPGVQGKVS IRTMTPLNERQYYQLFLNLLEAQGYAVVPMENDVLKVVKSSAAKVEPLPLVGEGSDNYAGDEMVTKVVPVRNVSVRELAP ILRQMIDSAGSGNVVNYDPSNVIMLTGRASVVERLTEVIQRVDHAGNRTEEVIPLDNASASEIARVLESLTKNSGENQPA TLKSQIVADERTNSVIVSGDPATRDKMRRLIRRLDSEMERSGNSQVFYLKYSKAEDLVDVLKQVSGTLTAAKEEAEGTVG SGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIRRAQVHVEALIVEVAEGSNINFGVQWASKDAGLMQFANGTQI PIGTLGAAISQAKPQKGSTVISENGATTINPDTNGDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSI TTLDNQEAFFMVGQDVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLDVVFGER KLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKEKRNLMVFIRPTILRDGMAADGVSQRKYN YMRAEQIYRDEQGLSLMPHTAQPVLPAQNQALPPEVRAFLNAGRTR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspD | CAE85234.1 | GspD, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 0.0 | 100 |
| gspD | YP_854407.1 | type II secretion protein GspD | Not tested | PAI I APEC-O1 | Protein | 0.0 | 99 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| epsD | YP_002409366.1 | general secretion pathway protein D | VFG2047 | Protein | 0.0 | 99 |
