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Name : yfcU (ECIAI39_2490) Accession : YP_002408445.1 Strain : Escherichia coli IAI39 Genome accession: NC_011750 Putative virulence/resistance : Virulence Product : putative export usher protein Function : - COG functional category : N : Cell motility COG ID : COG3188 EC number : - Position : 2574511 - 2577168 bp Length : 2658 bp Strand : - Note : Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pf : putative factor DNA sequence : ATGTGTATGCCTAATCACTCAAATTTTCGGCTGCGGGGAATCGCCTGCTATATTGCGCTGGCAATCTCTGGTGGATCAGT CAATGCATGGGCTGATGATTCCATTCAATTTGACCCCCGTTTCCTTGAGTTAAAGGGTGACACGAAAATTGATCTCGGTA AGTTTTCAAAAAAAGGGTATGTCGACGCGGGTAAATATAATTTACGTGTATTTATAAATAAACAACCCCTTTCTGATGAA TACGACATTAACTGGTACGTCTCTGAAAATGATCCAACAAAAACTTATGCCTGCCTGACACCTGAGTTAGTGGCGGCGCT GGGGCTGAAAGAAGGGATAGCAAAAAGCCTGCAGTGGACGCACAACGATGAATGCCTTAAACCGGGGCAATTAGATGGGA TGGAAGTCGAGAATGATTTAAGCCAGTCGGCGTTGCTGCTGACAGTGCCACAGGCTTATCTCGAATATACCAGCAGCGAC TGGGACCCACCCTCACGCTGGGACGACGGTATTCCTGGCCTGATTGCCGACTACAGCCTCAATGCGCAAACCCGTCATCA GGAGCAGGGTGGCGAGGACTCACATGATATCAGCGGCAACGGTACCGTTGGGGCGAATCTGGGGGCATGGCGTTTCCGCG CAGACTGGCAAAGTGATTATCAGCACACCCGCAGCAACGACGACGAAGACGATGACAGCAGTAACAGTACAACGAGCAAA AACTGGGACTGGAGCCGTTATTACGCCTGGCGGGCCTTACCCTCTTTAAAAGCCAAGCTGTCGCTGGGTGAAGATTATCT CAACTCCGATATTTTCGACGGCTTTAACTATATTGGCAGCAGCGTCAGCACCGATGACCAGATGCTGCCGCCCAACCTGC GCGGCTATGCGCCGGATGTCTCCGGCGTGGCGCACAGCAGTGCAAAAGTCACTATTAGCCAGATGGGCCGGGTACTTTAC GAAACCCAGGTTCCCGCCGGGCCATTCCGCATTCAGGATATCGGCGACTCCGTCTCCGGCACACTGCACGTCCGCGTTGA AGAACAGAATGGTCAGGTGCAGGAATATGACGTTACGACCGCATCTATGCCATTCCTCACGCGCCAGGGGCAGGTGCGTT ACAAAGTGATGATGGGGCGTCCGGAAGACTGGAACCACAAGACCGAAGGCGGCTTTTTCTCCGGCGGAGAAGCGTCATGG GGGGTGGCAGATGGCTGGTCGCTCTACGGTGGCGCGCTGGCAGATGAACACTACCAGTCGGCGGCGATGGGGGTGGGGCG CGACCTCGCACAGTTTGGCGCGCTGGCGTTCGATGTGACTCACTCGCACGTCAACCTGGATCATGACAGCGCATACGGCA AAGGAAAACTGGACGGCAACTCCTTTCGCGTGAGCTATGCCAAAGACTTTGACGAACTTAACAGCCGCGTCACCTTTGCA GGCTACCGTTTTTCTGAAAAGAACTTCATGACCATGAGCGAGTATCTGGACGCGAACCAGTCGGACATGGCGCGGACCGG TAACGACAAAGAGATGTATACGATCACCTATAACCAGAACTTTGCCGCTGCGGGTGTCTCGATCTATCTCAACTACTCCC ATCGTACTTACTGGGATCGCCCGGAACAGACAAACTATAACCTGATGTTTTCCCACTATTTTAATATGGGGAGTATTCGC AACATGAGCATCTCGGTGACCGGCTATCGCTACGAATATGACGATAACGCGGATAAGGGGATGTACCTCAGCATGAGCAT TCCGTGGAGCGACAGCAGCACCGTGACCTACAACGGCTCCTACGGCAGTGGGTCGGACAGCAGCCAGGTCGGTTACTTTA AGCGCGTTGATGACGCAACGCACTACCAGGTTAACGTCGGTACCAGCGAACAGCACGGCAGCGTGGATGGTTATCTGAGT CACGACGGCTCGCTGGCGAAGGTTGATCTCAGCGCCAACTACCATGAGGGGGAATACCGCTCGGCGGGGATCGCCTTACA GGGCGGGGCAACGCTGACCGCGCATGGTGGGGCGCTGCATCGCACTCAAAGCATGGGCGGTACGCGCTTGCTGATTGACG CCGACGGGATTGCCAATGTGCCGGTCGAAAGCAACGGCGCGCCGGTGTACACCAATATGTTTGGCAAGGCGGTGGTCGCC GATATTAACAACTACTATCGCAATCAGGCGTATATCGATTTAAACAACCTGCCAGAAGATGCGGAAGCCACCCAGTCGGT GGTACAGGCAACCCTGACGGAAGGTGCAATTGGCTATCGCAAATTCAAAGTGATCAGCGGGCAAAAAGCGATGGCGGTAC TGCGGTTGCGTGACGGCAGCTACCCGCCGTTTGGCGCGGAAGTGAAAAACGACGAGCAGCAGCAGGTTGGCATTGTGGAT GATGAAGGCAATGTCTATCTGGCGGGAGTCAATGCGGGTGAGCATATGACGGTGTTCTGGGAAGGCAGCGCACAATGCGA GATCGTATTGCCGAAGCCGCTACCTGCCGATCTGTTCAGCGGCCTGTTGTTGCCGTGTGAACAAAAGGGAACGGCAGCCC CTGATTCTTCAGCGCCAGAAATTAAGCCTGTTATTCAGGACCAGACGCGGCAAGTCACACCAACGGAAGCGCCGACGTCA ATTTCAGCTACTCAATAA Protein sequence : MCMPNHSNFRLRGIACYIALAISGGSVNAWADDSIQFDPRFLELKGDTKIDLGKFSKKGYVDAGKYNLRVFINKQPLSDE YDINWYVSENDPTKTYACLTPELVAALGLKEGIAKSLQWTHNDECLKPGQLDGMEVENDLSQSALLLTVPQAYLEYTSSD WDPPSRWDDGIPGLIADYSLNAQTRHQEQGGEDSHDISGNGTVGANLGAWRFRADWQSDYQHTRSNDDEDDDSSNSTTSK NWDWSRYYAWRALPSLKAKLSLGEDYLNSDIFDGFNYIGSSVSTDDQMLPPNLRGYAPDVSGVAHSSAKVTISQMGRVLY ETQVPAGPFRIQDIGDSVSGTLHVRVEEQNGQVQEYDVTTASMPFLTRQGQVRYKVMMGRPEDWNHKTEGGFFSGGEASW GVADGWSLYGGALADEHYQSAAMGVGRDLAQFGALAFDVTHSHVNLDHDSAYGKGKLDGNSFRVSYAKDFDELNSRVTFA GYRFSEKNFMTMSEYLDANQSDMARTGNDKEMYTITYNQNFAAAGVSIYLNYSHRTYWDRPEQTNYNLMFSHYFNMGSIR NMSISVTGYRYEYDDNADKGMYLSMSIPWSDSSTVTYNGSYGSGSDSSQVGYFKRVDDATHYQVNVGTSEQHGSVDGYLS HDGSLAKVDLSANYHEGEYRSAGIALQGGATLTAHGGALHRTQSMGGTRLLIDADGIANVPVESNGAPVYTNMFGKAVVA DINNYYRNQAYIDLNNLPEDAEATQSVVQATLTEGAIGYRKFKVISGQKAMAVLRLRDGSYPPFGAEVKNDEQQQVGIVD DEGNVYLAGVNAGEHMTVFWEGSAQCEIVLPKPLPADLFSGLLLPCEQKGTAAPDSSAPEIKPVIQDQTRQVTPTEAPTS ISATQ |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| pixC | CAE85159.1 | PixC protein | Not tested | PAI V 536 | Protein | 5e-145 | 43 |
| prfC | CAD42029.1 | PrfC protein | Virulence | PAI II 536 | Protein | 2e-138 | 42 |
| papC | YP_854254.1 | outer membrane usher protein PapC | Virulence | PAI I APEC-O1 | Protein | 2e-137 | 42 |
| papC | AAZ04424.1 | outer membrane usher protein | Virulence | PAI I APEC-O1 | Protein | 2e-137 | 42 |
| papC | NP_755465.1 | PapC protein | Virulence | PAI I CFT073 | Protein | 3e-138 | 42 |
| papC | YP_002414015.1 | Outer membrane usher protein PapC | Not tested | Not named | Protein | 3e-138 | 42 |
| papC_2 | NP_757034.1 | PapC protein | Virulence | PAI II CFT073 | Protein | 3e-138 | 42 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| yfcU | YP_002408445.1 | putative export usher protein | VFG1548 | Protein | 1e-138 | 42 |
| yfcU | YP_002408445.1 | putative export usher protein | VFG0884 | Protein | 1e-138 | 42 |
| yfcU | YP_002408445.1 | putative export usher protein | VFG0895 | Protein | 1e-138 | 42 |
