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Name : ycbS (ECIAI39_2207) Accession : YP_002408170.1 Strain : Escherichia coli IAI39 Genome accession: NC_011750 Putative virulence/resistance : Virulence Product : putative outer membrane export usher protein Function : - COG functional category : N : Cell motility COG ID : COG3188 EC number : - Position : 2252558 - 2255158 bp Length : 2601 bp Strand : - Note : Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pf : putative factor DNA sequence : ATGTATAGAACTCAACGACAACACAGCCTGTTAAGCTCTGGTGGAGTGCCATCGTTTATTGGTGGGCTGGTGGTGTTTGT GTCGGCAGTGTTCAATGCACAAGCTGAAACCTGGTTCGATCCAGCCTTTTTCAAAGATGATCCCTCAATGGTGGCTGATT TGTCTCGTTTCGAAAAAGGGCAAAAAATAACGCCAGGGGTTTATCGAGTCGATATTGTTCTGAATCAGACAATTGTAGAT ACGCGCAACGTCAATTTTGTTGAGATAACGCCAGAGAAGGGGATTGCCGCCTGTTTGACGACTGAAAGCCTGGATGCAAT GGGCGTGAATACTGATGCGTTTCCGGCTTTTAAACAACTGGATAAACAAGCGTGTGCGCCATTGGCGGAAATTATTCCGG ATGCCAGCGTAACTTTTAATGTGAATAAACTCCGTCTGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAACGCTCGT GGTTATGTCCCCCCTGAACGTTGGGATGAAGGGATCAACGCGCTATTACTGGGATATTCATTTAGCGGGGCTAACAGTAT TCATAGCAGCGCAGGTAGTGATTCTGGCGACAGCTATTTTCTGAATTTAAACAGTGGCGTTAATTTAGGCCCATGGAGAT TGCGCAACAATTCAACATGGAGTCGCAGTAGTGGCCAAACCGCAGAATGGAAGAATCTCAGCAGCTATTTGCAGCGGGCG GTGATTCCATTAAAAGGCGAACTGACCGTCGGTGATGATTATACGGCAGGCGATTTTTTTGATAGCGTCAGCTTTCGTGG CGTGCAGCTGGCGTCAGATGACAACATGCTGCCAGACAGCTTGAAAGGGTTTGCGCCAGTGGTGCGTGGTATCGCCAAAA GCAATGCACAGGTAACGATTAAGCAAAATGGTTACACCATCTATCAAACTTATGTTTCGCCTGGCGCTTTTGAGATTAGT GATCTCTACTCTACGTCGTCGAGTGGTGATTTGTTGGTTGAAATCAAAGAAGCTGACGGTAGTGTCAATAGTTACAGTGT GCCCTTTTCCAGCGTGCCATTACTCCAGCGTCAGGGACGCATCAAATATGCGGTGACGCTGGCGAAATACAGAACCAATA GTAATGACCAGCAAGAAAGTAAATTTGCTCAGGCCACGCTGCAATGGGGTGGGCCGTGGGGAACGACCTGGTATGGCGGA GGGCAATATGCTGAATATTACCGTACCGCTATGTTTGGTCTGGGTTTTAACCTCGGCGATTTCGGAGCAATTTCGTTCGA CGCGACCCAGGCTAAAAGTACGCTGGCAGACCAAAGTGAACATAAAGGGCAGTCATATCGTTTTCTGTATGCCAAAACGC TCAACCAATTGGGCACCAACTTTCAATTGATGGGCTACCGCTATTCGACGTCGGGTTTCTACACCCTTTCCGACACTATG TATAAACACATGGATGGCTATGAATTTAATGACGGTGATGATGAAGATACGCCAATGTGGTCGCGTTATTACAATTTGTT TTACACCAAACGTGGCAAACTGCAGGTCAACATCTCCCAGCAATTAGGCGAGTACGGTTCGTTTTATTTAAGCGGTAGCC AGCAAACTTACTGGCATACCGATCAACAGGATCGGCTATTACAGTTTGGCTACAACACGCAAATTAAAGATCTCTCGCTG GGGGTTTCCTGGAACTACAGTAAGTCCCGTGGTCAACCTGACGCTGACCAGGTGTTTGCACTTAATTTTTCCCTGCCGCT CAATCTGTTGCTCCCCAAAAGTAATGATAGCTATACCAGGAAAAAAAATTACGCCTGGATGACCTCTAATACCAGTATCG ATAATGAAGGGCATTCCACACAGAACCTCGGGTTAACCGAGACATTGCTGGATGACGGCAACCTGAGCTACAGCATACAA CAGGGGTATAACAGCGAGGGGAAAACGGCTAATGGTAGCGCCAGTATGGACTACAAAGGGGCGTTTGCAGATGCTCGAGT GGGCTACAACTACAGCGATAACGGCAGTCAACAACAACTTAACTACGCTCTTTCAGGCAGTTTAGTTGCCCATTCACAAG GCATTACCCTGGGGCAATCGCTGGGAGAAACTAACGTTCTGATTGCCGCGCCAGGCGCAGAGAATACTCGTGTGGCGAAC AGCACCGGGCTGAAAACTGACTGGCGTGGATATACCGTTGTGCCTTATGCCACTTCTTATCGGGAAAATCGAATTGCACT TGATGCGGCGTCGTTAAAACGTAACGTGGATCTTGAAAATGCCGTAGTAAACGTGGTTCCCACCAAAGGGGCATTGGTTC TGGCGGAGTTCAATGCCCATGCGGGGGCCAGGGTATTAATGAAAACATCAAAGCAGGGTATGCCGCTGAGATTTGGTGCA ATGGCAACACTGGATGGCGCACAAACAATTAGCGGTATCATTGATGATGATGGTTCGCTCTATATGTCTGGTTTGCCGGC GAAGGGAACGATAACTGTACGCTGGGGCGACGCTCCCGATCAAATTTGTCATATCAGTTACGAGCTTACCGAACAACAAA TTAACGCTGCGATTACGCGGATGGATTCAGTATGCGAATAA Protein sequence : MYRTQRQHSLLSSGGVPSFIGGLVVFVSAVFNAQAETWFDPAFFKDDPSMVADLSRFEKGQKITPGVYRVDIVLNQTIVD TRNVNFVEITPEKGIAACLTTESLDAMGVNTDAFPAFKQLDKQACAPLAEIIPDASVTFNVNKLRLEISVPQIAIKSNAR GYVPPERWDEGINALLLGYSFSGANSIHSSAGSDSGDSYFLNLNSGVNLGPWRLRNNSTWSRSSGQTAEWKNLSSYLQRA VIPLKGELTVGDDYTAGDFFDSVSFRGVQLASDDNMLPDSLKGFAPVVRGIAKSNAQVTIKQNGYTIYQTYVSPGAFEIS DLYSTSSSGDLLVEIKEADGSVNSYSVPFSSVPLLQRQGRIKYAVTLAKYRTNSNDQQESKFAQATLQWGGPWGTTWYGG GQYAEYYRTAMFGLGFNLGDFGAISFDATQAKSTLADQSEHKGQSYRFLYAKTLNQLGTNFQLMGYRYSTSGFYTLSDTM YKHMDGYEFNDGDDEDTPMWSRYYNLFYTKRGKLQVNISQQLGEYGSFYLSGSQQTYWHTDQQDRLLQFGYNTQIKDLSL GVSWNYSKSRGQPDADQVFALNFSLPLNLLLPKSNDSYTRKKNYAWMTSNTSIDNEGHSTQNLGLTETLLDDGNLSYSIQ QGYNSEGKTANGSASMDYKGAFADARVGYNYSDNGSQQQLNYALSGSLVAHSQGITLGQSLGETNVLIAAPGAENTRVAN STGLKTDWRGYTVVPYATSYRENRIALDAASLKRNVDLENAVVNVVPTKGALVLAEFNAHAGARVLMKTSKQGMPLRFGA MATLDGAQTISGIIDDDGSLYMSGLPAKGTITVRWGDAPDQICHISYELTEQQINAAITRMDSVCE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| fim2D | AFH78429.1 | putative fimbrial usher protein | Virulence | KpGI-5 | Protein | 0.0 | 48 |
| sfaF | CAC16953.2 | SfaF protein | Virulence | PAI III 536 | Protein | 0.0 | 46 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| ycbS | YP_002408170.1 | putative outer membrane export usher protein | VFG0876 | Protein | 0.0 | 49 |
| ycbS | YP_002408170.1 | putative outer membrane export usher protein | VFG0446 | Protein | 0.0 | 48 |
| ycbS | YP_002408170.1 | putative outer membrane export usher protein | VFG1645 | Protein | 0.0 | 46 |
| ycbS | YP_002408170.1 | putative outer membrane export usher protein | VFG0454 | Protein | 4e-169 | 45 |
| ycbS | YP_002408170.1 | putative outer membrane export usher protein | VFG0912 | Protein | 0.0 | 45 |
