Gene Information

Name : EC55989_4972 (EC55989_4972)
Accession : YP_002405818.1
Strain : Escherichia coli 55989
Genome accession: NC_011748
Putative virulence/resistance : Unknown
Product : transposase, IS3 family
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2963
EC number : -
Position : 5060750 - 5061151 bp
Length : 402 bp
Strand : -
Note : Evidence 4 : Homologs of previously reported genes of unknown function

DNA sequence :
GTGGGAACCAAAGTGTCAGATATGCAGAAAAATGTGAATCCCGGCAGGCGAAAAGGCTGCCCTAATTATCCTCCCGAATT
TAAACAGCAGCTCGTTGCTGCCTCCTGTGAACCCGGGATATCCATCTCAAAACTTGCTCTTGAAAATGGCATTAACGCCA
ATCTGTTGTTCAAATGGCGACAACAATGGCGTGAGGGAAAGCTGCTATTACCTTCTTCAGAGAGCCCCCAGCTACTTCCT
GTGACTCTCGATGCAGCTGCCGAACAGCCAGAATCGCTCGCAGAGGACCCGGAAACCCTCAGTATCAGCTGTGAGGTAAC
GTTCCGGCACGGGACGCTCCGCTTCAATGGCAATGTCAGCGAAAAGCTCCTGACTCTGCTGATACAGGAACTGAAGCGAT
GA

Protein sequence :
MGTKVSDMQKNVNPGRRKGCPNYPPEFKQQLVAASCEPGISISKLALENGINANLLFKWRQQWREGKLLLPSSESPQLLP
VTLDAAAEQPESLAEDPETLSISCEVTFRHGTLRFNGNVSEKLLTLLIQELKR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
l0013 CAD33777.1 L0013 protein Not tested PAI I 536 Protein 8e-47 99
unnamed AAL99257.1 unknown Not tested LEE Protein 6e-47 99
unnamed ACU09437.1 IS66 family element orf1 Not tested LEE Protein 6e-47 99
unnamed AAL08462.1 unknown Not tested SRL Protein 2e-49 99
unnamed AAC31492.1 L0013 Not tested LEE Protein 3e-50 99
c3577 NP_755452.1 hypothetical protein Not tested PAI I CFT073 Protein 4e-50 99
Z5096 NP_290247.1 prophage-associated protein Not tested LEE Protein 4e-50 99
ECs4545 NP_312572.1 hypothetical protein Not tested LEE Protein 4e-50 99
c3560 NP_755435.1 hypothetical protein Not tested PAI I CFT073 Protein 3e-24 56
ECUMN_3326 YP_002414006.1 putative transposase Not tested Not named Protein 3e-24 56

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
EC55989_4972 YP_002405818.1 transposase, IS3 family VFG1053 Protein 6e-50 99
EC55989_4972 YP_002405818.1 transposase, IS3 family VFG1708 Protein 1e-50 99
EC55989_4972 YP_002405818.1 transposase, IS3 family VFG1518 Protein 3e-47 99
EC55989_4972 YP_002405818.1 transposase, IS3 family VFG0791 Protein 1e-50 99
EC55989_4972 YP_002405818.1 transposase, IS3 family VFG1697 Protein 9e-25 56