Gene Information

Name : EC55989_4942 (EC55989_4942)
Accession : YP_002405793.1
Strain : Escherichia coli 55989
Genome accession: NC_011748
Putative virulence/resistance : Unknown
Product : transposase OrfA from plasmid origin
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2963
EC number : -
Position : 5032870 - 5033295 bp
Length : 426 bp
Strand : -
Note : Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type h : extrachromosomal origin

DNA sequence : 
ATGGAATTACAGGACTGGCGAAAAGAACCTCGTAAAAACTATTCGAATGAATTCAAACTTCGTATGGTGGAACTGGCATC
ACAACCTGGAGCTTGTGTTGCACAGATTGCACGTGAAAATGGCGTCAATGATAATGTTATTTTCAAATGGCTCAGGCTCT
GGCAGAACGAAGGGCGTGTTTCGCGGCGTCTTCCGGTAACGACCTCTTCTGACACTGGCGTTGAATTATTACCTGTAGAA
ATAACGCCGGATGAGCAGAAAGAACCTGTGGCGGCCATTGCGCCGTCTTTATCCACTTCCACTCAGACCAGAGTCAGTGC
CAGTTCCTGCAAGGTGGAATTCCGTCACGGTAACATGACGCTGGAAAATCCATCGCCAGAGCTGCTCACAGTGTTGATCT
GTGAACTGACCGGGAGGGGAAGATGA

Protein sequence : 
MELQDWRKEPRKNYSNEFKLRMVELASQPGACVAQIARENGVNDNVIFKWLRLWQNEGRVSRRLPVTTSSDTGVELLPVE
ITPDEQKEPVAAIAPSLSTSTQTRVSASSCKVEFRHGNMTLENPSPELLTVLICELTGRGR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ECO103_3566 YP_003223429.1 hypothetical protein Not tested LEE Protein 2e-59 97
Z1648 NP_287151.1 hypothetical protein Not tested TAI Protein 7e-56 91
Z1208 NP_286743.1 hypothetical protein Not tested TAI Protein 1e-56 91
unnamed CAD66197.1 hypothetical protein Not tested PAI III 536 Protein 2e-43 90
Z1159 NP_286694.1 hypothetical protein Not tested TAI Protein 4e-48 82
Z1598 NP_287102.1 hypothetical protein Not tested TAI Protein 4e-48 82
unnamed CAD66191.1 hypothetical protein Not tested PAI III 536 Protein 5e-45 75
ECUMN_3365 YP_002414038.1 putative transposase Not tested Not named Protein 4e-31 55

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
EC55989_4942 YP_002405793.1 transposase OrfA from plasmid origin VFG1672 Protein 6e-44 90
EC55989_4942 YP_002405793.1 transposase OrfA from plasmid origin VFG1666 Protein 2e-45 75
EC55989_4942 YP_002405793.1 transposase OrfA from plasmid origin VFG1738 Protein 1e-31 55