Gene Information

Name : yfjR (EC55989_4887)
Accession : YP_002405744.1
Strain : Escherichia coli 55989
Genome accession: NC_011748
Putative virulence/resistance : Virulence
Product : HTH-type transcriptional regulator
Function : -
COG functional category : K : Transcription
COG ID : COG2378
EC number : -
Position : 4998182 - 4998862 bp
Length : 681 bp
Strand : +
Note : Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pr : regulator

DNA sequence : 
ATGTCTGATAATCGTTCCCGGCATGATCGCCTGGCGGTTCGCTTATCACTCATTATCAGCCGACTGATGGCCGGAGAATC
TCTGTCACTAAAAACACTGTCAGATGAATTTGGCGTTACAGAACGTACTTTACAGCGCGATTTTCATCAGCGTCTGGTTC
ACCTGGATTTAGAGTACAGAAATGGCAGGTACAGCCTCAGACGACAGAGCAGCCCGGGTGCGATCCCTGAAATGCTTTCT
TTTATACAGAATACCGGGATCGCACGGATACTTCCGCTCCGGAACGGACGACTGATAACCTGTCTTACCGACAACCAGGA
GCCCTCTCCCTGCCTTATCTGGCTACCGGCGCCGGATATCACTGCAACGTTCCCCGAGTGTTTCTCGCAACTCATCCTGG
CAATAAGACAGTGTATCCACATCTCTCTGATGACTGAGCGATGGTATCCGTCACTGGAGCCCTGCCGGCTCATTTATTAC
AGCGGTAGCTGGTATCTGATCGCGTTACAGAAGGGAAAACTGCAGGTCTTTCCTCTGGCAGATATCAAATCAGTCAGCCT
GACATCAGAACGGTTTGAACGGAGAGGCCACATCCACAGTCTGGTCGCTGAAGAGCGTTTTATCTCCGCCCTGCCACATT
TCTCTTTCATCCATAAACTTATCAACACCTTTAACCTGTGA

Protein sequence : 
MSDNRSRHDRLAVRLSLIISRLMAGESLSLKTLSDEFGVTERTLQRDFHQRLVHLDLEYRNGRYSLRRQSSPGAIPEMLS
FIQNTGIARILPLRNGRLITCLTDNQEPSPCLIWLPAPDITATFPECFSQLILAIRQCIHISLMTERWYPSLEPCRLIYY
SGSWYLIALQKGKLQVFPLADIKSVSLTSERFERRGHIHSLVAEERFISALPHFSFIHKLINTFNL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD42094.1 hypothetical protein Not tested PAI II 536 Protein 2e-104 100
yfjR AAZ04453.1 transcriptional regulator Not tested PAI I APEC-O1 Protein 4e-104 99
c5160 NP_757008.1 transcriptional regulator YfjR Not tested PAI II CFT073 Protein 1e-103 99
APECO1_3492 YP_854319.1 transcriptional regulator Not tested PAI I APEC-O1 Protein 6e-104 99
unnamed CAD33782.1 hypothetical protein Not tested PAI I 536 Protein 7e-104 99

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
yfjR YP_002405744.1 HTH-type transcriptional regulator VFG1613 Protein 1e-104 100
yfjR YP_002405744.1 HTH-type transcriptional regulator VFG1523 Protein 4e-104 99