Gene Information

Name : EC55989_4878 (EC55989_4878)
Accession : YP_002405735.1
Strain : Escherichia coli 55989
Genome accession: NC_011748
Putative virulence/resistance : Unknown
Product : transposase/IS protein
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG1484
EC number : -
Position : 4990627 - 4991409 bp
Length : 783 bp
Strand : +
Note : Evidence 2b : Function of strongly homologous gene; Product type pe : enzyme

DNA sequence :
GTGATGATGGAACTGCAACATCAACGACTGATGGCGCTCGTCGGGCAGTTGCAACTGGAAAGCCTTATAAGCGCAGCGCC
TGCGCTGTCACAACAGGCAGTAGACCAGGAATGGAGTTATATGGACTTCCTGGAGCATCTGCTTCATGAAGAAAAACTGG
CACGTCATCAACGTAAACAGGCGATGTATACCCGAATGGCAGCCTTCCCGGCGGTGAAAACGTTCGAAGAGTATGACTTC
ACATTCGCCACCGGAGCACCGCAGAAGCAACTCCAGTCGTTACGCTCACTCAGCTTCATAGAACGTAATGAAAATATCGT
ATTACTGGGGCCATCAGGTGTGGGGAAAACCCATCTGGCAATAGCGATGGGCTATGAAGCAGTCCGTGCAGGTATCAAAG
TTCGCTTCACAACAGCAGCAGATCTGTTACTTCAGTTATCCACGGCGCAACGTCAGGGGCGTTATAAAACGACGCTTCAG
CGTGGAGTAATGGCCCCCCGCCTGCTCATCATTGATGAAATAGGCTATCTGCCGTTCAGTCAGGAAGAAGCAAAACTGTT
CTTCCAGGTCATCGCTAAACGTTACGAAAAGAGCGCAATGATCCTGACATCCAATCTGCCGTTCGGGCAGTGGGATCAAA
CGTTCGCCGGTGATGCAGCCCTGACCTCAGCGATGCTGGACCGTATCTTATACCACTCACATGTCGTTCAAATCAAAGGA
GAAAGCTATCGACTCAGACAGAAACGAAAGGCCGGGGTTATAGCAGAAGCTAATCCTGAGTAA

Protein sequence :
MMMELQHQRLMALVGQLQLESLISAAPALSQQAVDQEWSYMDFLEHLLHEEKLARHQRKQAMYTRMAAFPAVKTFEEYDF
TFATGAPQKQLQSLRSLSFIERNENIVLLGPSGVGKTHLAIAMGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQ
RGVMAPRLLIIDEIGYLPFSQEEAKLFFQVIAKRYEKSAMILTSNLPFGQWDQTFAGDAALTSAMLDRILYHSHVVQIKG
ESYRLRQKRKAGVIAEANPE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
y1093 CAD42087.1 OrfB protein of IS100 transposase Not tested PAI II 536 Protein 3e-119 99
YPTB1586 YP_070114.1 transposase/IS protein Not tested HPI Protein 5e-119 99
orfB CAE85183.1 OrfB protein, transposase, IS100 Not tested PAI V 536 Protein 3e-119 99
unnamed CAA21402.1 - Not tested HPI Protein 5e-119 99
api84 CAF28558.1 putative transposase Not tested YAPI Protein 3e-119 99
YPO1901 YP_002346891.1 transposase/IS protein Not tested HPI Protein 9e-120 99
y1093 CAC43411.1 IS100 transposase; transposase ORFA Not tested PAI III 536 Protein 3e-119 99
y2410 NP_669717.1 transposase/IS protein Not tested HPI Protein 9e-120 99
aec58 AAW51741.1 Aec58 Not tested AGI-3 Protein 1e-119 99
y1093 CAD66188.1 transposase Orf B, insertion element IS100 Not tested PAI III 536 Protein 2e-118 99
unnamed CAB46598.1 IS100 transposase Not tested HPI Protein 3e-119 99
s0036 CAD33774.1 ORF B protein Not tested PAI I 536 Protein 3e-119 99
y1094 CAD33719.1 ORF B protein Not tested PAI I 536 Protein 6e-85 99

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
EC55989_4878 YP_002405735.1 transposase/IS protein VFG1606 Protein 2e-119 99
EC55989_4878 YP_002405735.1 transposase/IS protein VFG1663 Protein 1e-118 99
EC55989_4878 YP_002405735.1 transposase/IS protein VFG1515 Protein 2e-119 99
EC55989_4878 YP_002405735.1 transposase/IS protein VFG1627 Protein 2e-119 99
EC55989_4878 YP_002405735.1 transposase/IS protein VFG1460 Protein 3e-85 99