Gene Information

Name : EC55989_3356 (EC55989_3356)
Accession : YP_002404319.1
Strain : Escherichia coli 55989
Genome accession: NC_011748
Putative virulence/resistance : Virulence
Product : GTPase
Function : -
COG functional category : R : General function prediction only
COG ID : COG3596
EC number : -
Position : 3437654 - 3438565 bp
Length : 912 bp
Strand : +
Note : Evidence 4 : Homologs of previously reported genes of unknown function

DNA sequence :
GTGCGCGGGGTTTTGTCTTTTTTCACCGGGAATACATGTATGAATCCGTCTGATGCCATTGAGGCAATTGAAAAACCGCT
CTCCTCCCTGCCTTACTCACTTTCCCGTCACATCCTGGAACATCTGCGCAAACTCACCAGTCACGAACCCGTGATTGGCA
TTATGGGTAAAAGCGGGGCCGGTAAATCTTCACTCTGTAATGCACTGTTTCAGGGGGAGGTCACACCGGTCAGTGATGTT
CACGCCGGCACCCGGGAAGTGCAGCGCTTCCGTCTGAGTGGTCACGGTCACAGCATGGTTATCACTGACCTGCCCGGGGT
GGGCGAGAGCCGGGACAGGGATGCAGAGTATGAAGCCCTGTACCGTGACATTCTGCCTGAACTGGACCTGGTGCTGTGGC
TGATTAAAGCCGATGACCGGGCCCTGTCTGTGGATGAGTATTTCTGGCGACACATCCTGCAGTGCGGACATCAGCAGGTG
CTGTTTGTGGTGACGCAGGCTGACAAAACGGAACCCTGCCATGAATGGGATATGGCAGGTATTCAGCCTTCTCCCGCACA
GGAACAGAACATTCGTGAGAAAACGGAGGCGGTATTCCGTCTGTTCCGGCCCGTACATCCGGTTGTTGCCGTATCGGCCC
GCACCGGCTGGGAACTGGATACGCTGGTCAGTGCGCTCATGACAGCGCTTCCCGACCATGCCGCCAGCCCCCTGATGACC
CGACTGCAGGACGAGCTGCGCACGGAGTCTGTCCGCTCTCAGGCCCGTGAACAGTTTACCGGTGCGGTGGACCGGATATT
TGACACAGCGGAGAGCGTCTGTGTTGCCTCTGTTGTCCGTACGGCCCTGCGCGCTGTTCGTGACACCGTGGTCTCTGTTG
CCCGCGCGGTATGGAACTGGATCTTCTTCTGA

Protein sequence :
MRGVLSFFTGNTCMNPSDAIEAIEKPLSSLPYSLSRHILEHLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDV
HAGTREVQRFRLSGHGHSMVITDLPGVGESRDRDAEYEALYRDILPELDLVLWLIKADDRALSVDEYFWRHILQCGHQQV
LFVVTQADKTEPCHEWDMAGIQPSPAQEQNIREKTEAVFRLFRPVHPVVAVSARTGWELDTLVSALMTALPDHAASPLMT
RLQDELRTESVRSQAREQFTGAVDRIFDTAESVCVASVVRTALRAVRDTVVSVARAVWNWIFF

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sap NP_838477.1 hypothetical protein Not tested SHI-1 Protein 1e-134 100
unnamed AAK00473.1 unknown Not tested SHI-1 Protein 3e-134 99
sap NP_708764.1 hypothetical protein Not tested SHI-1 Protein 4e-134 99
unnamed CAD66199.1 hypothetical protein Not tested PAI III 536 Protein 2e-131 98
unnamed AAL08471.1 unknown Not tested SRL Protein 3e-132 98
unnamed AAL99256.1 unknown Not tested LEE Protein 5e-133 98
aec64 AAW51747.1 Aec64 Not tested AGI-3 Protein 2e-138 98
yeeP ADD91709.1 YeeP Not tested PAI-I AL862 Protein 2e-138 98
Z1210 NP_286745.1 histone Not tested TAI Protein 3e-129 97
Z1650 NP_287153.1 hypothetical protein Not tested TAI Protein 3e-129 97
ECO103_3582 YP_003223441.1 hypothetical protein Not tested LEE Protein 3e-131 97
yeeP CAE85196.1 YeeP protein Not tested PAI V 536 Protein 4e-137 97
APECO1_1093 YP_853113.1 hypothetical protein Not tested PAI IV APEC-O1 Protein 2e-136 96

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
EC55989_3356 YP_002404319.1 GTPase VFG0654 Protein 2e-134 99
EC55989_3356 YP_002404319.1 GTPase VFG1062 Protein 2e-132 98
EC55989_3356 YP_002404319.1 GTPase VFG1674 Protein 1e-131 98